miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 5' -52.6 NC_003521.1 + 187057 0.67 0.986516
Target:  5'- --cGGGCGggaaGGGUGCCagcGAGCGGa -3'
miRNA:   3'- caaCCUGCa---UCUACGGguaCUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 104413 0.66 0.988068
Target:  5'- cUUGGA-GUAGAUGCCgAugaUGAGCuGa -3'
miRNA:   3'- cAACCUgCAUCUACGGgU---ACUCGuCa -5'
14602 5' -52.6 NC_003521.1 + 97581 0.66 0.990633
Target:  5'- -aUGGAgGUGGugaugacGUGCUCGUugGAGCAGg -3'
miRNA:   3'- caACCUgCAUC-------UACGGGUA--CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 173413 0.66 0.991906
Target:  5'- cGUUGuuGACGaugucgcguUGGAUGCCCGUGGuCAGg -3'
miRNA:   3'- -CAAC--CUGC---------AUCUACGGGUACUcGUCa -5'
14602 5' -52.6 NC_003521.1 + 127837 0.68 0.976332
Target:  5'- --gGGugGUAGuggcGCCCGccgcUGAGCGGc -3'
miRNA:   3'- caaCCugCAUCua--CGGGU----ACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 165836 0.68 0.97098
Target:  5'- --aGGGCG-AGAUGUCCA--GGCAGg -3'
miRNA:   3'- caaCCUGCaUCUACGGGUacUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 117845 0.68 0.97098
Target:  5'- --gGGACucaAGAUGCCCGUGA-CGGUc -3'
miRNA:   3'- caaCCUGca-UCUACGGGUACUcGUCA- -5'
14602 5' -52.6 NC_003521.1 + 126689 0.69 0.957772
Target:  5'- --aGGACGcugaUGGAggcgaacaUGCCgGUGAGCAGa -3'
miRNA:   3'- caaCCUGC----AUCU--------ACGGgUACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 106117 0.69 0.957772
Target:  5'- --cGGGCGUGGcgGCC-GUGGGCAc- -3'
miRNA:   3'- caaCCUGCAUCuaCGGgUACUCGUca -5'
14602 5' -52.6 NC_003521.1 + 39124 0.7 0.925829
Target:  5'- --cGGGCGUcugcagcgGGAUGCCCGUGuGCu-- -3'
miRNA:   3'- caaCCUGCA--------UCUACGGGUACuCGuca -5'
14602 5' -52.6 NC_003521.1 + 162585 0.7 0.924197
Target:  5'- -cUGGACGUgcagcgcuucugcaAGGUGCCCGUcgcucaGGGCGGc -3'
miRNA:   3'- caACCUGCA--------------UCUACGGGUA------CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 68392 0.71 0.882151
Target:  5'- -gUGGACGccgugAGAUGCCgGcUGGGCAGc -3'
miRNA:   3'- caACCUGCa----UCUACGGgU-ACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 64309 0.75 0.705188
Target:  5'- -aUGGGCgGUAGGcgUGCCCuAUGGGCGGUc -3'
miRNA:   3'- caACCUG-CAUCU--ACGGG-UACUCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 198924 0.66 0.99294
Target:  5'- --aGGGCGUAGAggaugggGUUgAUGAgGCAGUg -3'
miRNA:   3'- caaCCUGCAUCUa------CGGgUACU-CGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.