Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14602 | 5' | -52.6 | NC_003521.1 | + | 217115 | 1.08 | 0.009842 |
Target: 5'- gGUUGGACGUAGAUGCCCAUGAGCAGUa -3' miRNA: 3'- -CAACCUGCAUCUACGGGUACUCGUCA- -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 101934 | 0.82 | 0.375879 |
Target: 5'- -gUGGugGUAGAUGCCCGUGucCAGg -3' miRNA: 3'- caACCugCAUCUACGGGUACucGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 64309 | 0.75 | 0.705188 |
Target: 5'- -aUGGGCgGUAGGcgUGCCCuAUGGGCGGUc -3' miRNA: 3'- caACCUG-CAUCU--ACGGG-UACUCGUCA- -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 109278 | 0.72 | 0.873523 |
Target: 5'- -gUGGugGagaccggguaggAGGUGCCCuUGAGCAGg -3' miRNA: 3'- caACCugCa-----------UCUACGGGuACUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 68392 | 0.71 | 0.882151 |
Target: 5'- -gUGGACGccgugAGAUGCCgGcUGGGCAGc -3' miRNA: 3'- caACCUGCa----UCUACGGgU-ACUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 91583 | 0.7 | 0.916875 |
Target: 5'- --gGGGCGgugugugggucacgAGGUGCCgAUGGGCGGg -3' miRNA: 3'- caaCCUGCa-------------UCUACGGgUACUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 162585 | 0.7 | 0.924197 |
Target: 5'- -cUGGACGUgcagcgcuucugcaAGGUGCCCGUcgcucaGGGCGGc -3' miRNA: 3'- caACCUGCA--------------UCUACGGGUA------CUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 239352 | 0.7 | 0.925829 |
Target: 5'- --cGGGCGUcugcagcgGGAUGCCCGUGuGCu-- -3' miRNA: 3'- caaCCUGCA--------UCUACGGGUACuCGuca -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 39124 | 0.7 | 0.925829 |
Target: 5'- --cGGGCGUcugcagcgGGAUGCCCGUGuGCu-- -3' miRNA: 3'- caaCCUGCA--------UCUACGGGUACuCGuca -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 101797 | 0.7 | 0.931111 |
Target: 5'- aGUUGGGCGcgcacGAaGCCCAggGGGCGGUc -3' miRNA: 3'- -CAACCUGCau---CUaCGGGUa-CUCGUCA- -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 129259 | 0.7 | 0.93615 |
Target: 5'- -cUGGAUGUGGAagagcaucuUGCCCGUGGuCAGc -3' miRNA: 3'- caACCUGCAUCU---------ACGGGUACUcGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 100243 | 0.69 | 0.957772 |
Target: 5'- -cUGGGCG-AGGUGCCCGacgacGAGCuGUc -3' miRNA: 3'- caACCUGCaUCUACGGGUa----CUCGuCA- -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 106117 | 0.69 | 0.957772 |
Target: 5'- --cGGGCGUGGcgGCC-GUGGGCAc- -3' miRNA: 3'- caaCCUGCAUCuaCGGgUACUCGUca -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 126689 | 0.69 | 0.957772 |
Target: 5'- --aGGACGcugaUGGAggcgaacaUGCCgGUGAGCAGa -3' miRNA: 3'- caaCCUGC----AUCU--------ACGGgUACUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 113180 | 0.69 | 0.961402 |
Target: 5'- -aUGGGCcgcgAGGUGCCCGUcuucgugcacGAGCAGc -3' miRNA: 3'- caACCUGca--UCUACGGGUA----------CUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 18979 | 0.68 | 0.968 |
Target: 5'- -cUGGugGUGGAcGCCCAc-AGCGGc -3' miRNA: 3'- caACCugCAUCUaCGGGUacUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 117845 | 0.68 | 0.97098 |
Target: 5'- --gGGACucaAGAUGCCCGUGA-CGGUc -3' miRNA: 3'- caaCCUGca-UCUACGGGUACUcGUCA- -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 165836 | 0.68 | 0.97098 |
Target: 5'- --aGGGCG-AGAUGUCCA--GGCAGg -3' miRNA: 3'- caaCCUGCaUCUACGGGUacUCGUCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 106218 | 0.68 | 0.97098 |
Target: 5'- --gGGAUGUAGAggcugaUGCCCAgcGAGguGg -3' miRNA: 3'- caaCCUGCAUCU------ACGGGUa-CUCguCa -5' |
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14602 | 5' | -52.6 | NC_003521.1 | + | 148763 | 0.68 | 0.973755 |
Target: 5'- -aUGGAUcUGGGUGCCCuc-GGCGGUc -3' miRNA: 3'- caACCUGcAUCUACGGGuacUCGUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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