miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14602 5' -52.6 NC_003521.1 + 106117 0.69 0.957772
Target:  5'- --cGGGCGUGGcgGCC-GUGGGCAc- -3'
miRNA:   3'- caaCCUGCAUCuaCGGgUACUCGUca -5'
14602 5' -52.6 NC_003521.1 + 126689 0.69 0.957772
Target:  5'- --aGGACGcugaUGGAggcgaacaUGCCgGUGAGCAGa -3'
miRNA:   3'- caaCCUGC----AUCU--------ACGGgUACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 100243 0.69 0.957772
Target:  5'- -cUGGGCG-AGGUGCCCGacgacGAGCuGUc -3'
miRNA:   3'- caACCUGCaUCUACGGGUa----CUCGuCA- -5'
14602 5' -52.6 NC_003521.1 + 129259 0.7 0.93615
Target:  5'- -cUGGAUGUGGAagagcaucuUGCCCGUGGuCAGc -3'
miRNA:   3'- caACCUGCAUCU---------ACGGGUACUcGUCa -5'
14602 5' -52.6 NC_003521.1 + 101797 0.7 0.931111
Target:  5'- aGUUGGGCGcgcacGAaGCCCAggGGGCGGUc -3'
miRNA:   3'- -CAACCUGCau---CUaCGGGUa-CUCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 239352 0.7 0.925829
Target:  5'- --cGGGCGUcugcagcgGGAUGCCCGUGuGCu-- -3'
miRNA:   3'- caaCCUGCA--------UCUACGGGUACuCGuca -5'
14602 5' -52.6 NC_003521.1 + 39124 0.7 0.925829
Target:  5'- --cGGGCGUcugcagcgGGAUGCCCGUGuGCu-- -3'
miRNA:   3'- caaCCUGCA--------UCUACGGGUACuCGuca -5'
14602 5' -52.6 NC_003521.1 + 162585 0.7 0.924197
Target:  5'- -cUGGACGUgcagcgcuucugcaAGGUGCCCGUcgcucaGGGCGGc -3'
miRNA:   3'- caACCUGCA--------------UCUACGGGUA------CUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 91583 0.7 0.916875
Target:  5'- --gGGGCGgugugugggucacgAGGUGCCgAUGGGCGGg -3'
miRNA:   3'- caaCCUGCa-------------UCUACGGgUACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 68392 0.71 0.882151
Target:  5'- -gUGGACGccgugAGAUGCCgGcUGGGCAGc -3'
miRNA:   3'- caACCUGCa----UCUACGGgU-ACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 109278 0.72 0.873523
Target:  5'- -gUGGugGagaccggguaggAGGUGCCCuUGAGCAGg -3'
miRNA:   3'- caACCugCa-----------UCUACGGGuACUCGUCa -5'
14602 5' -52.6 NC_003521.1 + 64309 0.75 0.705188
Target:  5'- -aUGGGCgGUAGGcgUGCCCuAUGGGCGGUc -3'
miRNA:   3'- caACCUG-CAUCU--ACGGG-UACUCGUCA- -5'
14602 5' -52.6 NC_003521.1 + 101934 0.82 0.375879
Target:  5'- -gUGGugGUAGAUGCCCGUGucCAGg -3'
miRNA:   3'- caACCugCAUCUACGGGUACucGUCa -5'
14602 5' -52.6 NC_003521.1 + 217115 1.08 0.009842
Target:  5'- gGUUGGACGUAGAUGCCCAUGAGCAGUa -3'
miRNA:   3'- -CAACCUGCAUCUACGGGUACUCGUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.