miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 3' -63.8 NC_003521.1 + 240116 0.66 0.704571
Target:  5'- uGG-GGUGGGCGuGCGGUC-GUCC-CGg -3'
miRNA:   3'- -CCaCCGCCUGC-CGCCGGcCAGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 136879 0.66 0.69542
Target:  5'- --cGGCGGGUGGC-GCCGGUgUUCGc -3'
miRNA:   3'- ccaCCGCCUGCCGcCGGCCAgGAGCa -5'
14603 3' -63.8 NC_003521.1 + 223993 0.66 0.69542
Target:  5'- --cGGCGa--GGaCGGUCGGUCCUCa- -3'
miRNA:   3'- ccaCCGCcugCC-GCCGGCCAGGAGca -5'
14603 3' -63.8 NC_003521.1 + 77867 0.66 0.69542
Target:  5'- --gGGC-GAUGGC-GCCGG-CCUCGUa -3'
miRNA:   3'- ccaCCGcCUGCCGcCGGCCaGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 224436 0.66 0.69542
Target:  5'- cGUGGUGGGCGaGCGGuCCaGGUgcgUCUUGa -3'
miRNA:   3'- cCACCGCCUGC-CGCC-GG-CCA---GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 198390 0.66 0.69542
Target:  5'- uGUGGCGGGCGGCGacuCCGGcgUUUGa -3'
miRNA:   3'- cCACCGCCUGCCGCc--GGCCagGAGCa -5'
14603 3' -63.8 NC_003521.1 + 140564 0.66 0.694503
Target:  5'- --cGGCGG-CGGCGGCgacagcucgucguCGGgcaCCUCGc -3'
miRNA:   3'- ccaCCGCCuGCCGCCG-------------GCCa--GGAGCa -5'
14603 3' -63.8 NC_003521.1 + 178011 0.66 0.686225
Target:  5'- gGGUaGGaCGGA-GGCGGCCacGGUCgUCa- -3'
miRNA:   3'- -CCA-CC-GCCUgCCGCCGG--CCAGgAGca -5'
14603 3' -63.8 NC_003521.1 + 110687 0.66 0.686225
Target:  5'- cGGUGGCGGcaGCGGCGGCgccgCCgaCGa -3'
miRNA:   3'- -CCACCGCC--UGCCGCCGgccaGGa-GCa -5'
14603 3' -63.8 NC_003521.1 + 23544 0.66 0.686225
Target:  5'- cGGUGGUGGugGccaGCGcCUGcUCCUCGUc -3'
miRNA:   3'- -CCACCGCCugC---CGCcGGCcAGGAGCA- -5'
14603 3' -63.8 NC_003521.1 + 224019 0.66 0.686225
Target:  5'- --cGGCGGGCccGGCGGUCGGggcgggcgCCgUCGc -3'
miRNA:   3'- ccaCCGCCUG--CCGCCGGCCa-------GG-AGCa -5'
14603 3' -63.8 NC_003521.1 + 116627 0.66 0.686225
Target:  5'- aGGUGGUGGaguuccucaGCGGCagcuacGCCGG-CCUCu- -3'
miRNA:   3'- -CCACCGCC---------UGCCGc-----CGGCCaGGAGca -5'
14603 3' -63.8 NC_003521.1 + 168414 0.67 0.676993
Target:  5'- uGGUGGCuaGGGCgGGCGGCaGGgCCgCGg -3'
miRNA:   3'- -CCACCG--CCUG-CCGCCGgCCaGGaGCa -5'
14603 3' -63.8 NC_003521.1 + 109866 0.67 0.676993
Target:  5'- cGUGaCGGGCGGCGGCgGGgCCa--- -3'
miRNA:   3'- cCACcGCCUGCCGCCGgCCaGGagca -5'
14603 3' -63.8 NC_003521.1 + 119035 0.67 0.676068
Target:  5'- cGGauagGGCGGGCGGCGucgggguGCUGGagcgcUCCUCc- -3'
miRNA:   3'- -CCa---CCGCCUGCCGC-------CGGCC-----AGGAGca -5'
14603 3' -63.8 NC_003521.1 + 101132 0.67 0.66773
Target:  5'- gGGUcGGCGGGCacgcggaaaGcGCGGCgCGGUCUgCGUc -3'
miRNA:   3'- -CCA-CCGCCUG---------C-CGCCG-GCCAGGaGCA- -5'
14603 3' -63.8 NC_003521.1 + 154295 0.67 0.66773
Target:  5'- cGG-GGCGGcACGGCGuCCGGggCCgacgCGg -3'
miRNA:   3'- -CCaCCGCC-UGCCGCcGGCCa-GGa---GCa -5'
14603 3' -63.8 NC_003521.1 + 104105 0.67 0.66773
Target:  5'- --aGGCGG-CGcGCuGCCaGUCCUCGg -3'
miRNA:   3'- ccaCCGCCuGC-CGcCGGcCAGGAGCa -5'
14603 3' -63.8 NC_003521.1 + 128403 0.67 0.66773
Target:  5'- -cUGaGCGGGCgucgguccgaaaGGCGGCCGGUCggCGc -3'
miRNA:   3'- ccAC-CGCCUG------------CCGCCGGCCAGgaGCa -5'
14603 3' -63.8 NC_003521.1 + 209089 0.67 0.658444
Target:  5'- aGGcGGCGGagGCGGUGGCCGcggcGUCC-Ca- -3'
miRNA:   3'- -CCaCCGCC--UGCCGCCGGC----CAGGaGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.