miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14603 5' -59.5 NC_003521.1 + 92011 0.66 0.845488
Target:  5'- ---aGCGGCgAGGCGCGgCGgcgGcGGCGg -3'
miRNA:   3'- auugUGCCGgUCCGUGUgGCa--C-CCGU- -5'
14603 5' -59.5 NC_003521.1 + 113328 0.66 0.845488
Target:  5'- -uGCugGGCCAaG-ACGCCGggGGGCu -3'
miRNA:   3'- auUGugCCGGUcCgUGUGGCa-CCCGu -5'
14603 5' -59.5 NC_003521.1 + 19478 0.66 0.845488
Target:  5'- -uGCGCGGCCAGGUGCAg-GUGGcccGCu -3'
miRNA:   3'- auUGUGCCGGUCCGUGUggCACC---CGu -5'
14603 5' -59.5 NC_003521.1 + 16267 0.66 0.845488
Target:  5'- -uGCGCuGCCGcuGGUuccugcuggGCGCCGUGGGUg -3'
miRNA:   3'- auUGUGcCGGU--CCG---------UGUGGCACCCGu -5'
14603 5' -59.5 NC_003521.1 + 1348 0.66 0.845488
Target:  5'- cAAC-CGGCUGGGgcugaaCGCGCCGcGGGCc -3'
miRNA:   3'- aUUGuGCCGGUCC------GUGUGGCaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 178797 0.66 0.845488
Target:  5'- gGACG-GGCgAGGCAUGCCcggcGGGCGg -3'
miRNA:   3'- aUUGUgCCGgUCCGUGUGGca--CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 197353 0.66 0.844715
Target:  5'- cAGCACGGCCGccgcgcuGGCcCGCUGUgagaguuccaGGGCc -3'
miRNA:   3'- aUUGUGCCGGU-------CCGuGUGGCA----------CCCGu -5'
14603 5' -59.5 NC_003521.1 + 187611 0.66 0.837677
Target:  5'- gGGCACGGCCugccGGGCGaGCC--GGGCc -3'
miRNA:   3'- aUUGUGCCGG----UCCGUgUGGcaCCCGu -5'
14603 5' -59.5 NC_003521.1 + 145041 0.66 0.837677
Target:  5'- -cGCGUGGCCGagcGGCACgaugACCGUcuGGGCGg -3'
miRNA:   3'- auUGUGCCGGU---CCGUG----UGGCA--CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 164782 0.66 0.837677
Target:  5'- gUGACGCGG-CGGGCACGggUCGUcGGGg- -3'
miRNA:   3'- -AUUGUGCCgGUCCGUGU--GGCA-CCCgu -5'
14603 5' -59.5 NC_003521.1 + 102950 0.66 0.837677
Target:  5'- --uCGCGGuCCAGGCGC-UCGggcgucgGGGCu -3'
miRNA:   3'- auuGUGCC-GGUCCGUGuGGCa------CCCGu -5'
14603 5' -59.5 NC_003521.1 + 177789 0.66 0.837677
Target:  5'- cGACGgGGCCuguccgcuGGUggGCGUCGUGGGCGc -3'
miRNA:   3'- aUUGUgCCGGu-------CCG--UGUGGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 115019 0.66 0.837677
Target:  5'- --uUACGGCCAcGCACAacCCcUGGGCc -3'
miRNA:   3'- auuGUGCCGGUcCGUGU--GGcACCCGu -5'
14603 5' -59.5 NC_003521.1 + 36299 0.66 0.837677
Target:  5'- aAACGaGGCCgggugGGGCGCACCcucagucgGGGCGu -3'
miRNA:   3'- aUUGUgCCGG-----UCCGUGUGGca------CCCGU- -5'
14603 5' -59.5 NC_003521.1 + 91026 0.66 0.837677
Target:  5'- --uCACGGCC-GGCcguucgcggaACGCCGUGGcGUu -3'
miRNA:   3'- auuGUGCCGGuCCG----------UGUGGCACC-CGu -5'
14603 5' -59.5 NC_003521.1 + 92043 0.66 0.829694
Target:  5'- --cCGCGGCUccucGGCGCgaccGCCGaGGGCAc -3'
miRNA:   3'- auuGUGCCGGu---CCGUG----UGGCaCCCGU- -5'
14603 5' -59.5 NC_003521.1 + 29868 0.66 0.829694
Target:  5'- gGACGCagaaGGCCGuGGCgcuguuGCACC-UGGGCGa -3'
miRNA:   3'- aUUGUG----CCGGU-CCG------UGUGGcACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 122701 0.66 0.829694
Target:  5'- gGGCGucuCGGCgGGGCugGaggcggucguggUCGUGGGCGa -3'
miRNA:   3'- aUUGU---GCCGgUCCGugU------------GGCACCCGU- -5'
14603 5' -59.5 NC_003521.1 + 98472 0.66 0.829694
Target:  5'- cGGCgGCGGCCGcGGCG-GCCGUGGcgGCGg -3'
miRNA:   3'- aUUG-UGCCGGU-CCGUgUGGCACC--CGU- -5'
14603 5' -59.5 NC_003521.1 + 117512 0.66 0.829694
Target:  5'- --gUACGGCgGuauGCACuCCGUGGGCu -3'
miRNA:   3'- auuGUGCCGgUc--CGUGuGGCACCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.