miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 3' -55 NC_003521.1 + 104031 0.66 0.97445
Target:  5'- -cCAGCAgGGGGuACACGcaGUGCUCcgacgCCg -3'
miRNA:   3'- acGUCGUgUCCU-UGUGC--CACGAGa----GG- -5'
14604 3' -55 NC_003521.1 + 22457 0.66 0.97445
Target:  5'- cGCGGCACGccuGGcuCACGGUGgC-CUgCCu -3'
miRNA:   3'- aCGUCGUGU---CCuuGUGCCAC-GaGA-GG- -5'
14604 3' -55 NC_003521.1 + 123965 0.66 0.97445
Target:  5'- cUGCGcGCGCAGGucguCGCGGUcgGCgg-CCg -3'
miRNA:   3'- -ACGU-CGUGUCCuu--GUGCCA--CGagaGG- -5'
14604 3' -55 NC_003521.1 + 149138 0.66 0.97445
Target:  5'- cGCAGCACgcccAGGAGCccgcuGCGGaaUGCg--CCa -3'
miRNA:   3'- aCGUCGUG----UCCUUG-----UGCC--ACGagaGG- -5'
14604 3' -55 NC_003521.1 + 159903 0.66 0.972879
Target:  5'- gUGCAGUACGGGcAGCuCGGUGaggacaacgagaUCCu -3'
miRNA:   3'- -ACGUCGUGUCC-UUGuGCCACgag---------AGG- -5'
14604 3' -55 NC_003521.1 + 85118 0.66 0.971794
Target:  5'- gGCAGCgGCGGGcGGCACGuaGC-CUCCc -3'
miRNA:   3'- aCGUCG-UGUCC-UUGUGCcaCGaGAGG- -5'
14604 3' -55 NC_003521.1 + 157043 0.66 0.971794
Target:  5'- cGCGGuCGgAGGAGCGCGGcgggggGCg--CCg -3'
miRNA:   3'- aCGUC-GUgUCCUUGUGCCa-----CGagaGG- -5'
14604 3' -55 NC_003521.1 + 214565 0.66 0.971794
Target:  5'- gUGCAGUgagcaGCAGGGGCGaGGgGUcCUCCu -3'
miRNA:   3'- -ACGUCG-----UGUCCUUGUgCCaCGaGAGG- -5'
14604 3' -55 NC_003521.1 + 25775 0.66 0.971794
Target:  5'- gGCAGCcCAGGGgcuccACGCGGcUGCagC-CCa -3'
miRNA:   3'- aCGUCGuGUCCU-----UGUGCC-ACGa-GaGG- -5'
14604 3' -55 NC_003521.1 + 101137 0.66 0.971794
Target:  5'- gGCgGGCACGcGGAaaGCGCGGcGCggucugcgucccUCUCCu -3'
miRNA:   3'- aCG-UCGUGU-CCU--UGUGCCaCG------------AGAGG- -5'
14604 3' -55 NC_003521.1 + 127959 0.66 0.971794
Target:  5'- gGcCAGcCGCGGGAgcaGCugGGgcaGCUCggCCa -3'
miRNA:   3'- aC-GUC-GUGUCCU---UGugCCa--CGAGa-GG- -5'
14604 3' -55 NC_003521.1 + 32116 0.66 0.971794
Target:  5'- cGCGGCugaucucggGCAGGuagcgGGCGCGGUGCa--CCa -3'
miRNA:   3'- aCGUCG---------UGUCC-----UUGUGCCACGagaGG- -5'
14604 3' -55 NC_003521.1 + 129550 0.66 0.971794
Target:  5'- gGCGGCGCuGGcACGgCGGgcccgacgaugGCUgCUCCg -3'
miRNA:   3'- aCGUCGUGuCCuUGU-GCCa----------CGA-GAGG- -5'
14604 3' -55 NC_003521.1 + 66962 0.66 0.971518
Target:  5'- cGCuGCgGCAGGAcgagcgcagccugGCACGcaaGUGCUCgggCCu -3'
miRNA:   3'- aCGuCG-UGUCCU-------------UGUGC---CACGAGa--GG- -5'
14604 3' -55 NC_003521.1 + 122858 0.66 0.969239
Target:  5'- cGUAGCGCuGGuGCugGccgccgccgcgaugaUGCUCUCCu -3'
miRNA:   3'- aCGUCGUGuCCuUGugCc--------------ACGAGAGG- -5'
14604 3' -55 NC_003521.1 + 74930 0.66 0.968945
Target:  5'- gGCAGCGCGGGG---UGGUGUaC-CCg -3'
miRNA:   3'- aCGUCGUGUCCUuguGCCACGaGaGG- -5'
14604 3' -55 NC_003521.1 + 98222 0.66 0.968945
Target:  5'- gGCAGCggcgugggagGCGGGGAgGCGGggGCgg-CCa -3'
miRNA:   3'- aCGUCG----------UGUCCUUgUGCCa-CGagaGG- -5'
14604 3' -55 NC_003521.1 + 148748 0.66 0.968945
Target:  5'- gUGCAGUGCcucuucauGGAuCugGGUGCcCUCg -3'
miRNA:   3'- -ACGUCGUGu-------CCUuGugCCACGaGAGg -5'
14604 3' -55 NC_003521.1 + 79246 0.66 0.968945
Target:  5'- gGUAGCGCGGcGACAC---GUUCUCCg -3'
miRNA:   3'- aCGUCGUGUCcUUGUGccaCGAGAGG- -5'
14604 3' -55 NC_003521.1 + 119575 0.66 0.968945
Target:  5'- gUGagaAGUGCAGGAACACgcugggcggcgGGUGCagcgUCUCg -3'
miRNA:   3'- -ACg--UCGUGUCCUUGUG-----------CCACG----AGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.