miRNA display CGI


Results 21 - 40 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14604 5' -58.2 NC_003521.1 + 182737 0.66 0.856262
Target:  5'- uAAGGCCAaCGCC-UGUCUAGGCAUu- -3'
miRNA:   3'- -UUCCGGUcGUGGuACGGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 72034 0.66 0.856262
Target:  5'- -uGGCCuGCACCAgGUCCuGGUGCAGa -3'
miRNA:   3'- uuCCGGuCGUGGUaCGGGuCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 109876 0.66 0.856262
Target:  5'- gAAGGCCuugcGUGCCAUcUCCAcGGCGCGGg -3'
miRNA:   3'- -UUCCGGu---CGUGGUAcGGGU-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 196771 0.66 0.856262
Target:  5'- -cGGCCGGCGCgA--CCgCGGGCGCGGu -3'
miRNA:   3'- uuCCGGUCGUGgUacGG-GUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 57839 0.66 0.856262
Target:  5'- -cGGCCGGUgacgccgaacGCCGUcGCugCUAGACACGGa -3'
miRNA:   3'- uuCCGGUCG----------UGGUA-CG--GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 33536 0.66 0.856262
Target:  5'- uGAGGCCgaugaaguaaaGGCGgCcgGCCU-GACGCAGg -3'
miRNA:   3'- -UUCCGG-----------UCGUgGuaCGGGuCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 224861 0.66 0.856262
Target:  5'- cAGGCCGuagcGCGCCAgcucGUCCAGgugcuuggcGCACAGc -3'
miRNA:   3'- uUCCGGU----CGUGGUa---CGGGUC---------UGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 208410 0.66 0.848566
Target:  5'- gGAGGCCGuGCGCCAcgggcUGCUguGuCGCAc -3'
miRNA:   3'- -UUCCGGU-CGUGGU-----ACGGguCuGUGUc -5'
14604 5' -58.2 NC_003521.1 + 107205 0.66 0.848566
Target:  5'- uGAGGCUG--GCCAUGCCC--ACACAGu -3'
miRNA:   3'- -UUCCGGUcgUGGUACGGGucUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 30246 0.66 0.848566
Target:  5'- cAGGUCcGCGCgGuUGCCguGGCGCAGc -3'
miRNA:   3'- uUCCGGuCGUGgU-ACGGguCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 64345 0.66 0.848566
Target:  5'- --aGCCAGCugCAgGCCCuGGGCGCc- -3'
miRNA:   3'- uucCGGUCGugGUaCGGG-UCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 17365 0.66 0.848566
Target:  5'- --cGCCGGCGCgGcgGCCCAGACuCGa -3'
miRNA:   3'- uucCGGUCGUGgUa-CGGGUCUGuGUc -5'
14604 5' -58.2 NC_003521.1 + 125561 0.66 0.847786
Target:  5'- cGGGUuuucgauCAGUuguuCCGUGCCCucGACGCAGa -3'
miRNA:   3'- uUCCG-------GUCGu---GGUACGGGu-CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 55016 0.67 0.84068
Target:  5'- uAAGGCgCAGCGCCAgcgucggcgGCUCcgagAGACGCGu -3'
miRNA:   3'- -UUCCG-GUCGUGGUa--------CGGG----UCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 112990 0.67 0.84068
Target:  5'- -cGGCgGGCGCCAcuaccaCCCGGGCACc- -3'
miRNA:   3'- uuCCGgUCGUGGUac----GGGUCUGUGuc -5'
14604 5' -58.2 NC_003521.1 + 215056 0.67 0.84068
Target:  5'- uGGaGCCccugGGCugCcuggugGUGCCCGGACACAu -3'
miRNA:   3'- uUC-CGG----UCGugG------UACGGGUCUGUGUc -5'
14604 5' -58.2 NC_003521.1 + 110998 0.67 0.84068
Target:  5'- cGGGCCccAGCAgCAggcgGCCCAgcaccaacuuGACGCGGu -3'
miRNA:   3'- uUCCGG--UCGUgGUa---CGGGU----------CUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 122736 0.67 0.84068
Target:  5'- uGGGCgaCGGCGCCGccgauggcUGacaCCGGGCACGGg -3'
miRNA:   3'- uUCCG--GUCGUGGU--------ACg--GGUCUGUGUC- -5'
14604 5' -58.2 NC_003521.1 + 2211 0.67 0.84068
Target:  5'- -cGGCCGGCcCUAcGCCCAGGCc--- -3'
miRNA:   3'- uuCCGGUCGuGGUaCGGGUCUGuguc -5'
14604 5' -58.2 NC_003521.1 + 202439 0.67 0.84068
Target:  5'- -cGGCCGGCcCUAcGCCCAGGCc--- -3'
miRNA:   3'- uuCCGGUCGuGGUaCGGGUCUGuguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.