Results 61 - 80 of 161 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 214463 | 0.67 | 0.918184 |
Target: 5'- -gAGACUgcuucuacaGCGUGCuGGACCGcuGGAAGCc -3' miRNA: 3'- caUCUGGg--------CGCACG-UCUGGU--CCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 97846 | 0.67 | 0.918184 |
Target: 5'- gGUGcGACagagagGgGUGCGGGCCAGGGAGa -3' miRNA: 3'- -CAU-CUGgg----CgCACGUCUGGUCCUUCg -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 228627 | 0.67 | 0.917628 |
Target: 5'- -gAGAacCCCGCG-GCgcgcaaaccaccaAGACCAGGAucaguaGGCa -3' miRNA: 3'- caUCU--GGGCGCaCG-------------UCUGGUCCU------UCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 96779 | 0.67 | 0.938575 |
Target: 5'- --cGGCCaugcagaaGCGccGCAGACCggaacgGGGAAGCg -3' miRNA: 3'- cauCUGGg-------CGCa-CGUCUGG------UCCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 115195 | 0.67 | 0.943108 |
Target: 5'- -gAGuACCUGC-UGCGGGCCAaGGAcuGCa -3' miRNA: 3'- caUC-UGGGCGcACGUCUGGU-CCUu-CG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 196993 | 0.67 | 0.943108 |
Target: 5'- -cGGGCCCGCGgccggcggcgGCuGACCcGGcuGCu -3' miRNA: 3'- caUCUGGGCGCa---------CGuCUGGuCCuuCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 43425 | 0.67 | 0.928834 |
Target: 5'- -----aCUGCGUGCccGACgAGGAGGCg -3' miRNA: 3'- caucugGGCGCACGu-CUGgUCCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 79039 | 0.67 | 0.928834 |
Target: 5'- --uGGCCgGCGUGaCAGACauggcgUAGGggGUc -3' miRNA: 3'- cauCUGGgCGCAC-GUCUG------GUCCuuCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 86608 | 0.67 | 0.928834 |
Target: 5'- -aAGcGCUCGUGguggcgGUAGAgCAGGAAGCc -3' miRNA: 3'- caUC-UGGGCGCa-----CGUCUgGUCCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 34458 | 0.67 | 0.928834 |
Target: 5'- -cGGGCCUGgGggucgucgccGCAGGCCAgcagcucgcGGAAGCa -3' miRNA: 3'- caUCUGGGCgCa---------CGUCUGGU---------CCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 165958 | 0.67 | 0.923622 |
Target: 5'- --cGugUCGUGcucggGCAGGCUgAGGAAGCg -3' miRNA: 3'- cauCugGGCGCa----CGUCUGG-UCCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 188664 | 0.67 | 0.923622 |
Target: 5'- -cGGACCCGCGguaccgucgcUGaCGGGCgGGGGAuacGCg -3' miRNA: 3'- caUCUGGGCGC----------AC-GUCUGgUCCUU---CG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 145445 | 0.67 | 0.923622 |
Target: 5'- gGUGGACCUgugcuucgGCGUGCucaaGCaGGGggGCa -3' miRNA: 3'- -CAUCUGGG--------CGCACGuc--UGgUCCuuCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 226350 | 0.67 | 0.918185 |
Target: 5'- --cGcCCCGCGgGUAGcGCCGcGGGAGCg -3' miRNA: 3'- cauCuGGGCGCaCGUC-UGGU-CCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 216348 | 0.67 | 0.918185 |
Target: 5'- aGUAGAUCCaGCacgcGCuGGCCAGGcaGAGCa -3' miRNA: 3'- -CAUCUGGG-CGca--CGuCUGGUCC--UUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 72980 | 0.67 | 0.917628 |
Target: 5'- aGUAGccgacgaGCCCGCG-GCGGucgugcCCGGGggGg -3' miRNA: 3'- -CAUC-------UGGGCGCaCGUCu-----GGUCCuuCg -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 213226 | 0.68 | 0.88697 |
Target: 5'- -gAGGCCCacguagaugagcaGCGagccGCGGACCAcgucGGAGGCg -3' miRNA: 3'- caUCUGGG-------------CGCa---CGUCUGGU----CCUUCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 113322 | 0.68 | 0.887637 |
Target: 5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3' miRNA: 3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 196963 | 0.68 | 0.887637 |
Target: 5'- --cGGCCCGgGaGCcGGCCGGGgcGCc -3' miRNA: 3'- cauCUGGGCgCaCGuCUGGUCCuuCG- -5' |
|||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 87901 | 0.68 | 0.906631 |
Target: 5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3' miRNA: 3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home