Results 81 - 100 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 36770 | 0.68 | 0.912521 |
Target: 5'- -aGGACgCGCGUggccugGCGGGCguGGAGGa -3' miRNA: 3'- caUCUGgGCGCA------CGUCUGguCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 36834 | 0.68 | 0.912521 |
Target: 5'- -cGGGCCgGCGcUGCuGuGCCGGGuaGAGCa -3' miRNA: 3'- caUCUGGgCGC-ACGuC-UGGUCC--UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 216920 | 0.68 | 0.90052 |
Target: 5'- -gAGuCCUGCGUGguGAagAGGAugAGCa -3' miRNA: 3'- caUCuGGGCGCACguCUggUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 67260 | 0.68 | 0.90052 |
Target: 5'- --cGACCCGUGgcaggaggGCGGGCaGGGAGGa -3' miRNA: 3'- cauCUGGGCGCa-------CGUCUGgUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 109824 | 0.68 | 0.894187 |
Target: 5'- uGUAGgccGCCCGCGU-CAGGCUGGGuaccguGCu -3' miRNA: 3'- -CAUC---UGGGCGCAcGUCUGGUCCuu----CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 86608 | 0.67 | 0.928834 |
Target: 5'- -aAGcGCUCGUGguggcgGUAGAgCAGGAAGCc -3' miRNA: 3'- caUC-UGGGCGCa-----CGUCUgGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 172375 | 0.67 | 0.943108 |
Target: 5'- -cGGGCaCCGUGUGUuccAUCAGGAAGg -3' miRNA: 3'- caUCUG-GGCGCACGuc-UGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 214373 | 0.67 | 0.943108 |
Target: 5'- -cAGGCCaCGCcguUGCAGGCCAcGAacAGCg -3' miRNA: 3'- caUCUGG-GCGc--ACGUCUGGUcCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 115361 | 0.67 | 0.943108 |
Target: 5'- -gAGGUCaCGCGUcGCuGGCCAGGGccGGCa -3' miRNA: 3'- caUCUGG-GCGCA-CGuCUGGUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 102033 | 0.67 | 0.943108 |
Target: 5'- cUGGGCCacgGCGcGCAGcacgGCCGGGuuGAGCa -3' miRNA: 3'- cAUCUGGg--CGCaCGUC----UGGUCC--UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 207058 | 0.67 | 0.943108 |
Target: 5'- -cAGGCCggagGCGuUGCAGGgCAGGAgacGGCu -3' miRNA: 3'- caUCUGGg---CGC-ACGUCUgGUCCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 16577 | 0.67 | 0.938576 |
Target: 5'- ---cGCCUGCGagGC-GACCGGGGAGg -3' miRNA: 3'- caucUGGGCGCa-CGuCUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 120928 | 0.67 | 0.938576 |
Target: 5'- -cGGcuGCCCGCGgcgGCggcuccggcgaGGGgCAGGggGCg -3' miRNA: 3'- caUC--UGGGCGCa--CG-----------UCUgGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 51543 | 0.67 | 0.938576 |
Target: 5'- aGUGGGUCCGCaucuUGguGGCUcGGAGGCg -3' miRNA: 3'- -CAUCUGGGCGc---ACguCUGGuCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 238488 | 0.67 | 0.933818 |
Target: 5'- --cGGCCCaGgGUcaGCAGccCCAGGAGGCc -3' miRNA: 3'- cauCUGGG-CgCA--CGUCu-GGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 150420 | 0.67 | 0.933818 |
Target: 5'- -cGGACCCGUcUGUcgcGugCAGGAgAGCg -3' miRNA: 3'- caUCUGGGCGcACGu--CugGUCCU-UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 132303 | 0.67 | 0.931851 |
Target: 5'- cGUGGAggccaacaaaaucuCCCGCGUGCgccugcgGGugCuaguGGAAGUg -3' miRNA: 3'- -CAUCU--------------GGGCGCACG-------UCugGu---CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 43425 | 0.67 | 0.928834 |
Target: 5'- -----aCUGCGUGCccGACgAGGAGGCg -3' miRNA: 3'- caucugGGCGCACGu-CUGgUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 79039 | 0.67 | 0.928834 |
Target: 5'- --uGGCCgGCGUGaCAGACauggcgUAGGggGUc -3' miRNA: 3'- cauCUGGgCGCAC-GUCUG------GUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 34458 | 0.67 | 0.928834 |
Target: 5'- -cGGGCCUGgGggucgucgccGCAGGCCAgcagcucgcGGAAGCa -3' miRNA: 3'- caUCUGGGCgCa---------CGUCUGGU---------CCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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