Results 61 - 80 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 87631 | 0.68 | 0.887637 |
Target: 5'- -aGGugCCGCc-GCAGGCCucgcacaggcuGGAGGCg -3' miRNA: 3'- caUCugGGCGcaCGUCUGGu----------CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 113322 | 0.68 | 0.887637 |
Target: 5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3' miRNA: 3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 129411 | 0.68 | 0.894187 |
Target: 5'- ---cGCCCGCuUGCAGAaaUgGGGGAGCc -3' miRNA: 3'- caucUGGGCGcACGUCU--GgUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 20998 | 0.68 | 0.894187 |
Target: 5'- cUGGAUCCGgGUcucggaGGGCCuGGAGGCg -3' miRNA: 3'- cAUCUGGGCgCAcg----UCUGGuCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 109824 | 0.68 | 0.894187 |
Target: 5'- uGUAGgccGCCCGCGU-CAGGCUGGGuaccguGCu -3' miRNA: 3'- -CAUC---UGGGCGCAcGUCUGGUCCuu----CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 37704 | 0.68 | 0.90052 |
Target: 5'- --cGGCUCGCagaGUGCcuuuGGCCAGGcGGCg -3' miRNA: 3'- cauCUGGGCG---CACGu---CUGGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 67260 | 0.68 | 0.90052 |
Target: 5'- --cGACCCGUGgcaggaggGCGGGCaGGGAGGa -3' miRNA: 3'- cauCUGGGCGCa-------CGUCUGgUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 129081 | 0.68 | 0.90052 |
Target: 5'- -cAGACCCucgGCGUacuGCAGGCUguGGGuGGCg -3' miRNA: 3'- caUCUGGG---CGCA---CGUCUGG--UCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 116609 | 0.68 | 0.90052 |
Target: 5'- -cGGGCCCG-GUcGCGGGCCAGaaaGGGCc -3' miRNA: 3'- caUCUGGGCgCA-CGUCUGGUCc--UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 184160 | 0.68 | 0.90052 |
Target: 5'- --cGACCUG-GUGCGcGAgCGGGAGGUg -3' miRNA: 3'- cauCUGGGCgCACGU-CUgGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 216920 | 0.68 | 0.90052 |
Target: 5'- -gAGuCCUGCGUGguGAagAGGAugAGCa -3' miRNA: 3'- caUCuGGGCGCACguCUggUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 13901 | 0.68 | 0.906631 |
Target: 5'- -gGGGCCCgGCGcggaGgGGGCCGcGGAGGCc -3' miRNA: 3'- caUCUGGG-CGCa---CgUCUGGU-CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 90622 | 0.68 | 0.906631 |
Target: 5'- uGUGGACCUGCcagaAGGCCcgccGGGAGCg -3' miRNA: 3'- -CAUCUGGGCGcacgUCUGGu---CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 35961 | 0.68 | 0.906631 |
Target: 5'- --uGACCUGCGUGCccgAGAuCCGGGuGGa -3' miRNA: 3'- cauCUGGGCGCACG---UCU-GGUCCuUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 87901 | 0.68 | 0.906631 |
Target: 5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3' miRNA: 3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 78180 | 0.68 | 0.91252 |
Target: 5'- -cGGAUCCauggcgaaacgGCGUGCGGAgCGGGcgcGGCg -3' miRNA: 3'- caUCUGGG-----------CGCACGUCUgGUCCu--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 68391 | 0.68 | 0.91252 |
Target: 5'- gGUGGACgCCGUGagaUGCcGGCUGGGcAGCa -3' miRNA: 3'- -CAUCUG-GGCGC---ACGuCUGGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 196755 | 0.68 | 0.91252 |
Target: 5'- --uGACCCGCagguagggguUGCGGAUCuGGAAGUc -3' miRNA: 3'- cauCUGGGCGc---------ACGUCUGGuCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 130045 | 0.68 | 0.91252 |
Target: 5'- gGUGGACCUGa--GCgAGACCcuGGAGGCc -3' miRNA: 3'- -CAUCUGGGCgcaCG-UCUGGu-CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 36834 | 0.68 | 0.912521 |
Target: 5'- -cGGGCCgGCGcUGCuGuGCCGGGuaGAGCa -3' miRNA: 3'- caUCUGGgCGC-ACGuC-UGGUCC--UUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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