miRNA display CGI


Results 81 - 100 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 153454 0.68 0.912521
Target:  5'- cGUAGGCCaGCGgcucGCAGGCCAcguacacgcGGAuGCc -3'
miRNA:   3'- -CAUCUGGgCGCa---CGUCUGGU---------CCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 36770 0.68 0.912521
Target:  5'- -aGGACgCGCGUggccugGCGGGCguGGAGGa -3'
miRNA:   3'- caUCUGgGCGCA------CGUCUGguCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 196755 0.68 0.91252
Target:  5'- --uGACCCGCagguagggguUGCGGAUCuGGAAGUc -3'
miRNA:   3'- cauCUGGGCGc---------ACGUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 130045 0.68 0.91252
Target:  5'- gGUGGACCUGa--GCgAGACCcuGGAGGCc -3'
miRNA:   3'- -CAUCUGGGCgcaCG-UCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 78180 0.68 0.91252
Target:  5'- -cGGAUCCauggcgaaacgGCGUGCGGAgCGGGcgcGGCg -3'
miRNA:   3'- caUCUGGG-----------CGCACGUCUgGUCCu--UCG- -5'
14605 3' -55.9 NC_003521.1 + 68391 0.68 0.91252
Target:  5'- gGUGGACgCCGUGagaUGCcGGCUGGGcAGCa -3'
miRNA:   3'- -CAUCUG-GGCGC---ACGuCUGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 13901 0.68 0.906631
Target:  5'- -gGGGCCCgGCGcggaGgGGGCCGcGGAGGCc -3'
miRNA:   3'- caUCUGGG-CGCa---CgUCUGGU-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87901 0.68 0.906631
Target:  5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3'
miRNA:   3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 90622 0.68 0.906631
Target:  5'- uGUGGACCUGCcagaAGGCCcgccGGGAGCg -3'
miRNA:   3'- -CAUCUGGGCGcacgUCUGGu---CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 35961 0.68 0.906631
Target:  5'- --uGACCUGCGUGCccgAGAuCCGGGuGGa -3'
miRNA:   3'- cauCUGGGCGCACG---UCU-GGUCCuUCg -5'
14605 3' -55.9 NC_003521.1 + 216920 0.68 0.90052
Target:  5'- -gAGuCCUGCGUGguGAagAGGAugAGCa -3'
miRNA:   3'- caUCuGGGCGCACguCUggUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 67260 0.68 0.90052
Target:  5'- --cGACCCGUGgcaggaggGCGGGCaGGGAGGa -3'
miRNA:   3'- cauCUGGGCGCa-------CGUCUGgUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 37704 0.68 0.90052
Target:  5'- --cGGCUCGCagaGUGCcuuuGGCCAGGcGGCg -3'
miRNA:   3'- cauCUGGGCG---CACGu---CUGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 129081 0.68 0.90052
Target:  5'- -cAGACCCucgGCGUacuGCAGGCUguGGGuGGCg -3'
miRNA:   3'- caUCUGGG---CGCA---CGUCUGG--UCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 116609 0.68 0.90052
Target:  5'- -cGGGCCCG-GUcGCGGGCCAGaaaGGGCc -3'
miRNA:   3'- caUCUGGGCgCA-CGUCUGGUCc--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 184160 0.68 0.90052
Target:  5'- --cGACCUG-GUGCGcGAgCGGGAGGUg -3'
miRNA:   3'- cauCUGGGCgCACGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 109824 0.68 0.894187
Target:  5'- uGUAGgccGCCCGCGU-CAGGCUGGGuaccguGCu -3'
miRNA:   3'- -CAUC---UGGGCGCAcGUCUGGUCCuu----CG- -5'
14605 3' -55.9 NC_003521.1 + 20998 0.68 0.894187
Target:  5'- cUGGAUCCGgGUcucggaGGGCCuGGAGGCg -3'
miRNA:   3'- cAUCUGGGCgCAcg----UCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129411 0.68 0.894187
Target:  5'- ---cGCCCGCuUGCAGAaaUgGGGGAGCc -3'
miRNA:   3'- caucUGGGCGcACGUCU--GgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 113322 0.68 0.887637
Target:  5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3'
miRNA:   3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.