miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 87901 0.68 0.906631
Target:  5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3'
miRNA:   3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 88778 0.66 0.958672
Target:  5'- -cGGACCUGCGggugaagcaccgcUGCGGcCUGGuGAAGCc -3'
miRNA:   3'- caUCUGGGCGC-------------ACGUCuGGUC-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 90622 0.68 0.906631
Target:  5'- uGUGGACCUGCcagaAGGCCcgccGGGAGCg -3'
miRNA:   3'- -CAUCUGGGCGcacgUCUGGu---CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 91527 0.66 0.951504
Target:  5'- gGUGGGCggaGCGU-C-GACCGGGGAGCc -3'
miRNA:   3'- -CAUCUGgg-CGCAcGuCUGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 91853 0.66 0.959028
Target:  5'- ----cCCCuccaggGCG-GCGGACCAGGAcGGCg -3'
miRNA:   3'- caucuGGG------CGCaCGUCUGGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 91939 0.76 0.513007
Target:  5'- gGUGGACCCgGCG-GCGGACCccguGGcGGCg -3'
miRNA:   3'- -CAUCUGGG-CGCaCGUCUGGu---CCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 92118 0.68 0.887637
Target:  5'- -cGGAaccCCCGgGUGCGGuuCGGGcGGCg -3'
miRNA:   3'- caUCU---GGGCgCACGUCugGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 96779 0.67 0.938575
Target:  5'- --cGGCCaugcagaaGCGccGCAGACCggaacgGGGAAGCg -3'
miRNA:   3'- cauCUGGg-------CGCa-CGUCUGG------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 97297 0.71 0.766774
Target:  5'- cGgcGGCgCGCGUGCGGAUCAGGc--- -3'
miRNA:   3'- -CauCUGgGCGCACGUCUGGUCCuucg -5'
14605 3' -55.9 NC_003521.1 + 97846 0.67 0.918184
Target:  5'- gGUGcGACagagagGgGUGCGGGCCAGGGAGa -3'
miRNA:   3'- -CAU-CUGgg----CgCACGUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 98591 0.67 0.928833
Target:  5'- -cGGGCCCGCGagcGCAgcGACgAGGccauGGCg -3'
miRNA:   3'- caUCUGGGCGCa--CGU--CUGgUCCu---UCG- -5'
14605 3' -55.9 NC_003521.1 + 99317 0.67 0.938575
Target:  5'- -cAGGUCCGgGacgagGCGGGCCAGGuGGGCa -3'
miRNA:   3'- caUCUGGGCgCa----CGUCUGGUCC-UUCG- -5'
14605 3' -55.9 NC_003521.1 + 100967 0.66 0.962471
Target:  5'- --cGACCCGCaguucGUGCAGAUCAac-AGCu -3'
miRNA:   3'- cauCUGGGCG-----CACGUCUGGUccuUCG- -5'
14605 3' -55.9 NC_003521.1 + 102033 0.67 0.943108
Target:  5'- cUGGGCCacgGCGcGCAGcacgGCCGGGuuGAGCa -3'
miRNA:   3'- cAUCUGGg--CGCaCGUC----UGGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 103492 0.67 0.933818
Target:  5'- -cGGGCCCGCGUGaUAGGugaacUCGGGGucgccgcgcAGCa -3'
miRNA:   3'- caUCUGGGCGCAC-GUCU-----GGUCCU---------UCG- -5'
14605 3' -55.9 NC_003521.1 + 104238 0.66 0.962136
Target:  5'- cGUGGAgCUGCGcgagcUGCAGGCCuuccucgAGGAgaacuucaAGCa -3'
miRNA:   3'- -CAUCUgGGCGC-----ACGUCUGG-------UCCU--------UCG- -5'
14605 3' -55.9 NC_003521.1 + 104437 0.7 0.835253
Target:  5'- --cGGCCCGCGgccgaggUGgAGugUAGGAAGUc -3'
miRNA:   3'- cauCUGGGCGC-------ACgUCugGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 104803 0.69 0.880873
Target:  5'- -cGGAagcaCCGCGUGCAGGCguaCAGcGAGuGCa -3'
miRNA:   3'- caUCUg---GGCGCACGUCUG---GUC-CUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 107907 0.67 0.918184
Target:  5'- -gAGACCCGUaaggaUGUAGACCAacucGGAguGGCc -3'
miRNA:   3'- caUCUGGGCGc----ACGUCUGGU----CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 109366 0.72 0.690244
Target:  5'- -aGGACUCguccaGCGgcagGCAGGCCAGGucGCg -3'
miRNA:   3'- caUCUGGG-----CGCa---CGUCUGGUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.