miRNA display CGI


Results 121 - 140 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 180225 0.66 0.951504
Target:  5'- gGUGGuGCCgCGCGUGUGGGCCucGAAcuGCu -3'
miRNA:   3'- -CAUC-UGG-GCGCACGUCUGGucCUU--CG- -5'
14605 3' -55.9 NC_003521.1 + 180891 0.66 0.962136
Target:  5'- --uGAUCgGCGUccacgucGgAGACCAGGAAGg -3'
miRNA:   3'- cauCUGGgCGCA-------CgUCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 181312 0.69 0.86672
Target:  5'- -cAGG-CCGCccGCGGGCCAGGgcGCc -3'
miRNA:   3'- caUCUgGGCGcaCGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 181394 0.66 0.955374
Target:  5'- -cAGA-CCGUGUccgacggaGguGACCAGGAAGa -3'
miRNA:   3'- caUCUgGGCGCA--------CguCUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 184160 0.68 0.90052
Target:  5'- --cGACCUG-GUGCGcGAgCGGGAGGUg -3'
miRNA:   3'- cauCUGGGCgCACGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 186159 0.81 0.285334
Target:  5'- --cGGCCUGCGUGCAcGGCCAGGAcaucgugcgcgagAGCg -3'
miRNA:   3'- cauCUGGGCGCACGU-CUGGUCCU-------------UCG- -5'
14605 3' -55.9 NC_003521.1 + 187282 0.72 0.70982
Target:  5'- --cGGCCCGCGUuucuuucgGCAGcCCGguGGGAGCg -3'
miRNA:   3'- cauCUGGGCGCA--------CGUCuGGU--CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 188664 0.67 0.923622
Target:  5'- -cGGACCCGCGguaccgucgcUGaCGGGCgGGGGAuacGCg -3'
miRNA:   3'- caUCUGGGCGC----------AC-GUCUGgUCCUU---CG- -5'
14605 3' -55.9 NC_003521.1 + 190600 0.66 0.946147
Target:  5'- aGUGGcCCCGCGaccugacuucgcgcUcuucggGCGGACCggacAGGAGGCg -3'
miRNA:   3'- -CAUCuGGGCGC--------------A------CGUCUGG----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 195616 0.66 0.964437
Target:  5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3'
miRNA:   3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 196076 0.71 0.792949
Target:  5'- gGUGGACUgGCGcgagagcUGCAGACCccGGAucAGCg -3'
miRNA:   3'- -CAUCUGGgCGC-------ACGUCUGGu-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 196239 0.66 0.955374
Target:  5'- -aGGugUCGCGcGCuGACCAGaAAGUa -3'
miRNA:   3'- caUCugGGCGCaCGuCUGGUCcUUCG- -5'
14605 3' -55.9 NC_003521.1 + 196755 0.68 0.91252
Target:  5'- --uGACCCGCagguagggguUGCGGAUCuGGAAGUc -3'
miRNA:   3'- cauCUGGGCGc---------ACGUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 196963 0.68 0.887637
Target:  5'- --cGGCCCGgGaGCcGGCCGGGgcGCc -3'
miRNA:   3'- cauCUGGGCgCaCGuCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 196993 0.67 0.943108
Target:  5'- -cGGGCCCGCGgccggcggcgGCuGACCcGGcuGCu -3'
miRNA:   3'- caUCUGGGCGCa---------CGuCUGGuCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 198015 0.66 0.951504
Target:  5'- -gAGAUUgccguugcggCGCGUGCAGccGCCGGGcuGCa -3'
miRNA:   3'- caUCUGG----------GCGCACGUC--UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 200500 0.66 0.955374
Target:  5'- -gGGACCCGCaGcGgAGGCCGGaucGGAGUg -3'
miRNA:   3'- caUCUGGGCG-CaCgUCUGGUC---CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 207058 0.67 0.943108
Target:  5'- -cAGGCCggagGCGuUGCAGGgCAGGAgacGGCu -3'
miRNA:   3'- caUCUGGg---CGC-ACGUCUgGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 211452 0.73 0.660555
Target:  5'- --cGGCCuCGCGgucgggGCAGGCCAuGAGGCg -3'
miRNA:   3'- cauCUGG-GCGCa-----CGUCUGGUcCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 213226 0.68 0.88697
Target:  5'- -gAGGCCCacguagaugagcaGCGagccGCGGACCAcgucGGAGGCg -3'
miRNA:   3'- caUCUGGG-------------CGCa---CGUCUGGU----CCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.