miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 180225 0.66 0.951504
Target:  5'- gGUGGuGCCgCGCGUGUGGGCCucGAAcuGCu -3'
miRNA:   3'- -CAUC-UGG-GCGCACGUCUGGucCUU--CG- -5'
14605 3' -55.9 NC_003521.1 + 177180 0.66 0.965708
Target:  5'- -cGGGCacgggguugCGCGUGCGGuacuucuCCAGGcGGCg -3'
miRNA:   3'- caUCUGg--------GCGCACGUCu------GGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 175794 0.69 0.851766
Target:  5'- -cGGGgCUGCacGCGGGCCAGGAuGCg -3'
miRNA:   3'- caUCUgGGCGcaCGUCUGGUCCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 174162 0.76 0.52254
Target:  5'- -aAGACCCGCaUGCAGAUCuccuGGAuGCg -3'
miRNA:   3'- caUCUGGGCGcACGUCUGGu---CCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 174123 0.7 0.802585
Target:  5'- -cAGACCCucaggGgGUcGCAGcCCAGGAGGUa -3'
miRNA:   3'- caUCUGGG-----CgCA-CGUCuGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 173229 0.66 0.959028
Target:  5'- aGUAGcuuGCCCGCGUGUuggcgacucuGGCCcGcGggGCc -3'
miRNA:   3'- -CAUC---UGGGCGCACGu---------CUGGuC-CuuCG- -5'
14605 3' -55.9 NC_003521.1 + 172425 0.66 0.965708
Target:  5'- -gGGACCCGag-GCGGAggAGGAAGa -3'
miRNA:   3'- caUCUGGGCgcaCGUCUggUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 172375 0.67 0.943108
Target:  5'- -cGGGCaCCGUGUGUuccAUCAGGAAGg -3'
miRNA:   3'- caUCUG-GGCGCACGuc-UGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 168796 0.72 0.738694
Target:  5'- -aGGACCUG-GUGCAGGCCAcGcGGCg -3'
miRNA:   3'- caUCUGGGCgCACGUCUGGUcCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 167384 0.73 0.677417
Target:  5'- cGUGGugCCgaaagagcucgucgGCGUGCAGGuCgGGGAAGUg -3'
miRNA:   3'- -CAUCugGG--------------CGCACGUCU-GgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 165958 0.67 0.923622
Target:  5'- --cGugUCGUGcucggGCAGGCUgAGGAAGCg -3'
miRNA:   3'- cauCugGGCGCa----CGUCUGG-UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 155491 0.7 0.819645
Target:  5'- --cGGCCUGCG-GCGGGCCGcGGGccaaGGCu -3'
miRNA:   3'- cauCUGGGCGCaCGUCUGGU-CCU----UCG- -5'
14605 3' -55.9 NC_003521.1 + 153454 0.68 0.912521
Target:  5'- cGUAGGCCaGCGgcucGCAGGCCAcguacacgcGGAuGCc -3'
miRNA:   3'- -CAUCUGGgCGCa---CGUCUGGU---------CCUuCG- -5'
14605 3' -55.9 NC_003521.1 + 152342 0.69 0.858592
Target:  5'- -cGGGCCCGCGccgacgcUGCucugGGGCCGGccGggGCg -3'
miRNA:   3'- caUCUGGGCGC-------ACG----UCUGGUC--CuuCG- -5'
14605 3' -55.9 NC_003521.1 + 150773 0.66 0.962471
Target:  5'- uGUGcGCUCGCGcgacgacggGCGGgcgcgagccGCCAGGggGCg -3'
miRNA:   3'- -CAUcUGGGCGCa--------CGUC---------UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 150420 0.67 0.933818
Target:  5'- -cGGACCCGUcUGUcgcGugCAGGAgAGCg -3'
miRNA:   3'- caUCUGGGCGcACGu--CugGUCCU-UCG- -5'
14605 3' -55.9 NC_003521.1 + 150358 0.69 0.86672
Target:  5'- -gAGGUCUGCGUGCGGACCGuGGucgacuGCu -3'
miRNA:   3'- caUCUGGGCGCACGUCUGGU-CCuu----CG- -5'
14605 3' -55.9 NC_003521.1 + 149150 0.75 0.571115
Target:  5'- -aGGAgCCCGC-UGCGGaaugcGCCAGGGAGCc -3'
miRNA:   3'- caUCU-GGGCGcACGUC-----UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 149069 0.69 0.844003
Target:  5'- -gGGACCCGCGggGUAGGgUAGGcaGGGUg -3'
miRNA:   3'- caUCUGGGCGCa-CGUCUgGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 145445 0.67 0.923622
Target:  5'- gGUGGACCUgugcuucgGCGUGCucaaGCaGGGggGCa -3'
miRNA:   3'- -CAUCUGGG--------CGCACGuc--UGgUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.