miRNA display CGI


Results 61 - 80 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 132303 0.67 0.931851
Target:  5'- cGUGGAggccaacaaaaucuCCCGCGUGCgccugcgGGugCuaguGGAAGUg -3'
miRNA:   3'- -CAUCU--------------GGGCGCACG-------UCugGu---CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 130045 0.68 0.91252
Target:  5'- gGUGGACCUGa--GCgAGACCcuGGAGGCc -3'
miRNA:   3'- -CAUCUGGGCgcaCG-UCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129842 0.66 0.963463
Target:  5'- -gGGGCCCGUGgccgugcccugcuacUGCGacgagugggugacGGCCGGGGAGg -3'
miRNA:   3'- caUCUGGGCGC---------------ACGU-------------CUGGUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 129411 0.68 0.894187
Target:  5'- ---cGCCCGCuUGCAGAaaUgGGGGAGCc -3'
miRNA:   3'- caucUGGGCGcACGUCU--GgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129081 0.68 0.90052
Target:  5'- -cAGACCCucgGCGUacuGCAGGCUguGGGuGGCg -3'
miRNA:   3'- caUCUGGG---CGCA---CGUCUGG--UCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 128138 0.66 0.951106
Target:  5'- gGgcGGCCCGCGcucggcgaaggccUGCAGG-CAGGgcGUg -3'
miRNA:   3'- -CauCUGGGCGC-------------ACGUCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 127067 0.66 0.947417
Target:  5'- -cGGugCCGCG-GCAgGGCCAccgacGaGAGGCg -3'
miRNA:   3'- caUCugGGCGCaCGU-CUGGU-----C-CUUCG- -5'
14605 3' -55.9 NC_003521.1 + 124918 0.66 0.96043
Target:  5'- -gGGGCCCGUGUucagcacgguguacaGCAGuCCGuGGGugGGCa -3'
miRNA:   3'- caUCUGGGCGCA---------------CGUCuGGU-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 124089 0.72 0.719518
Target:  5'- -cGGGCCCGaCG-GCGuGGgCGGGAAGCa -3'
miRNA:   3'- caUCUGGGC-GCaCGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 120928 0.67 0.938576
Target:  5'- -cGGcuGCCCGCGgcgGCggcuccggcgaGGGgCAGGggGCg -3'
miRNA:   3'- caUC--UGGGCGCa--CG-----------UCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 120538 0.69 0.859341
Target:  5'- -aGGGCCCucgGCGgccgGCGGuCCcgGGGGAGCg -3'
miRNA:   3'- caUCUGGG---CGCa---CGUCuGG--UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 116686 0.66 0.951504
Target:  5'- ---uGCCCGUcgucgGUGgAGGCCucGGAAGCg -3'
miRNA:   3'- caucUGGGCG-----CACgUCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 116609 0.68 0.90052
Target:  5'- -cGGGCCCG-GUcGCGGGCCAGaaaGGGCc -3'
miRNA:   3'- caUCUGGGCgCA-CGUCUGGUCc--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 115361 0.67 0.943108
Target:  5'- -gAGGUCaCGCGUcGCuGGCCAGGGccGGCa -3'
miRNA:   3'- caUCUGG-GCGCA-CGuCUGGUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 115195 0.67 0.943108
Target:  5'- -gAGuACCUGC-UGCGGGCCAaGGAcuGCa -3'
miRNA:   3'- caUC-UGGGCGcACGUCUGGU-CCUu-CG- -5'
14605 3' -55.9 NC_003521.1 + 113322 0.68 0.887637
Target:  5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3'
miRNA:   3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 112069 0.72 0.719518
Target:  5'- -aGGACgCCGCgGUGgGGAUCAGGGgcGGCu -3'
miRNA:   3'- caUCUG-GGCG-CACgUCUGGUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 110876 0.68 0.914813
Target:  5'- --cGGCCCGCG-GCAGaacugcgccgucucgGCCAGGuguucGCg -3'
miRNA:   3'- cauCUGGGCGCaCGUC---------------UGGUCCuu---CG- -5'
14605 3' -55.9 NC_003521.1 + 110652 0.77 0.42229
Target:  5'- -gAGAUCgCGCGgcagGCAGGCCAGGGcguAGCg -3'
miRNA:   3'- caUCUGG-GCGCa---CGUCUGGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 110336 0.66 0.961799
Target:  5'- -aAGGCCaCGCGUGacaggucgccgaAGAgCAGGAGcGCu -3'
miRNA:   3'- caUCUGG-GCGCACg-----------UCUgGUCCUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.