miRNA display CGI


Results 101 - 120 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 87901 0.68 0.906631
Target:  5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3'
miRNA:   3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87753 0.66 0.959028
Target:  5'- -gAGACCagcuGCGgacagguggcGCAGGCCAGGGccaGGUg -3'
miRNA:   3'- caUCUGGg---CGCa---------CGUCUGGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 87744 0.66 0.947417
Target:  5'- gGUGGGCCC-CGgccCGGGCCccggcggcggAGGAGGCc -3'
miRNA:   3'- -CAUCUGGGcGCac-GUCUGG----------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87704 0.69 0.873191
Target:  5'- -gAGGCCCGUGUuguagauGCAGACCcGGuugAGGUg -3'
miRNA:   3'- caUCUGGGCGCA-------CGUCUGGuCC---UUCG- -5'
14605 3' -55.9 NC_003521.1 + 87631 0.68 0.887637
Target:  5'- -aGGugCCGCc-GCAGGCCucgcacaggcuGGAGGCg -3'
miRNA:   3'- caUCugGGCGcaCGUCUGGu----------CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87012 0.66 0.947417
Target:  5'- -aGGGCCa-CGUGCuggauGACCAGGAAc- -3'
miRNA:   3'- caUCUGGgcGCACGu----CUGGUCCUUcg -5'
14605 3' -55.9 NC_003521.1 + 86608 0.67 0.928834
Target:  5'- -aAGcGCUCGUGguggcgGUAGAgCAGGAAGCc -3'
miRNA:   3'- caUC-UGGGCGCa-----CGUCUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 86370 0.7 0.827936
Target:  5'- --uGACCaacaGCGUGCGGAagGGGAAGa -3'
miRNA:   3'- cauCUGGg---CGCACGUCUggUCCUUCg -5'
14605 3' -55.9 NC_003521.1 + 82758 0.68 0.912521
Target:  5'- -gAGAUCaCGCGcgaccgGCGGGCCGuGGAGCa -3'
miRNA:   3'- caUCUGG-GCGCa-----CGUCUGGUcCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 80039 0.66 0.959028
Target:  5'- -aAGACCCGCGcccGCGuGCCGccGGcGGCa -3'
miRNA:   3'- caUCUGGGCGCa--CGUcUGGU--CCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 79039 0.67 0.928834
Target:  5'- --uGGCCgGCGUGaCAGACauggcgUAGGggGUc -3'
miRNA:   3'- cauCUGGgCGCAC-GUCUG------GUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 78897 0.68 0.912521
Target:  5'- -gGGuCCaCGCGggccucGUAGACgGGGAAGCc -3'
miRNA:   3'- caUCuGG-GCGCa-----CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 78180 0.68 0.91252
Target:  5'- -cGGAUCCauggcgaaacgGCGUGCGGAgCGGGcgcGGCg -3'
miRNA:   3'- caUCUGGG-----------CGCACGUCUgGUCCu--UCG- -5'
14605 3' -55.9 NC_003521.1 + 77657 0.71 0.775918
Target:  5'- uUGGAacugCCGuCGggagacaGCAGGCCGGGggGCa -3'
miRNA:   3'- cAUCUg---GGC-GCa------CGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 76182 0.68 0.887637
Target:  5'- -cGGGCCUGCGUG-AGGCgccaCAGGAugGGCc -3'
miRNA:   3'- caUCUGGGCGCACgUCUG----GUCCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 72980 0.67 0.917628
Target:  5'- aGUAGccgacgaGCCCGCG-GCGGucgugcCCGGGggGg -3'
miRNA:   3'- -CAUC-------UGGGCGCaCGUCu-----GGUCCuuCg -5'
14605 3' -55.9 NC_003521.1 + 69715 0.7 0.802585
Target:  5'- cGgcGGCCCugagguacGCGguaacgGCGGGCgGGGAGGCg -3'
miRNA:   3'- -CauCUGGG--------CGCa-----CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 68391 0.68 0.91252
Target:  5'- gGUGGACgCCGUGagaUGCcGGCUGGGcAGCa -3'
miRNA:   3'- -CAUCUG-GGCGC---ACGuCUGGUCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 68175 0.69 0.86672
Target:  5'- ----cCCCaGCGcGCAGACCAagcGGggGCg -3'
miRNA:   3'- caucuGGG-CGCaCGUCUGGU---CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 67821 0.73 0.680383
Target:  5'- -aAGcAUCCGCGUGCAGcGgCAGGAAcGCg -3'
miRNA:   3'- caUC-UGGGCGCACGUC-UgGUCCUU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.