Results 61 - 80 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 104437 | 0.7 | 0.835253 |
Target: 5'- --cGGCCCGCGgccgaggUGgAGugUAGGAAGUc -3' miRNA: 3'- cauCUGGGCGC-------ACgUCugGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 223102 | 0.69 | 0.849457 |
Target: 5'- cGUAGAUCUGCGggaugGCGGccgucucgcgcagcACCAGG-AGCc -3' miRNA: 3'- -CAUCUGGGCGCa----CGUC--------------UGGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 215441 | 0.68 | 0.887637 |
Target: 5'- -cAGAgCCGCGggugcugGCgccAGGCCgAGGGAGCc -3' miRNA: 3'- caUCUgGGCGCa------CG---UCUGG-UCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 76182 | 0.68 | 0.887637 |
Target: 5'- -cGGGCCUGCGUG-AGGCgccaCAGGAugGGCc -3' miRNA: 3'- caUCUGGGCGCACgUCUG----GUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 92118 | 0.68 | 0.887637 |
Target: 5'- -cGGAaccCCCGgGUGCGGuuCGGGcGGCg -3' miRNA: 3'- caUCU---GGGCgCACGUCugGUCCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 109824 | 0.68 | 0.894187 |
Target: 5'- uGUAGgccGCCCGCGU-CAGGCUGGGuaccguGCu -3' miRNA: 3'- -CAUC---UGGGCGCAcGUCUGGUCCuu----CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 67260 | 0.68 | 0.90052 |
Target: 5'- --cGACCCGUGgcaggaggGCGGGCaGGGAGGa -3' miRNA: 3'- cauCUGGGCGCa-------CGUCUGgUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 216920 | 0.68 | 0.90052 |
Target: 5'- -gAGuCCUGCGUGguGAagAGGAugAGCa -3' miRNA: 3'- caUCuGGGCGCACguCUggUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 36834 | 0.68 | 0.912521 |
Target: 5'- -cGGGCCgGCGcUGCuGuGCCGGGuaGAGCa -3' miRNA: 3'- caUCUGGgCGC-ACGuC-UGGUCC--UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 36770 | 0.68 | 0.912521 |
Target: 5'- -aGGACgCGCGUggccugGCGGGCguGGAGGa -3' miRNA: 3'- caUCUGgGCGCA------CGUCUGguCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 113322 | 0.68 | 0.887637 |
Target: 5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3' miRNA: 3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 87631 | 0.68 | 0.887637 |
Target: 5'- -aGGugCCGCc-GCAGGCCucgcacaggcuGGAGGCg -3' miRNA: 3'- caUCugGGCGcaCGUCUGGu----------CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 152342 | 0.69 | 0.858592 |
Target: 5'- -cGGGCCCGCGccgacgcUGCucugGGGCCGGccGggGCg -3' miRNA: 3'- caUCUGGGCGC-------ACG----UCUGGUC--CuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 216238 | 0.69 | 0.859341 |
Target: 5'- -gAGGCCUacgaGCGggagGUGGACgAGGAGGCc -3' miRNA: 3'- caUCUGGG----CGCa---CGUCUGgUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 65035 | 0.69 | 0.859341 |
Target: 5'- --uGGCCCGCGUGCAGccCCGGcuaauGAcGCg -3' miRNA: 3'- cauCUGGGCGCACGUCu-GGUC-----CUuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 150358 | 0.69 | 0.86672 |
Target: 5'- -gAGGUCUGCGUGCGGACCGuGGucgacuGCu -3' miRNA: 3'- caUCUGGGCGCACGUCUGGU-CCuu----CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 181312 | 0.69 | 0.86672 |
Target: 5'- -cAGG-CCGCccGCGGGCCAGGgcGCc -3' miRNA: 3'- caUCUgGGCGcaCGUCUGGUCCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 87704 | 0.69 | 0.873191 |
Target: 5'- -gAGGCCCGUGUuguagauGCAGACCcGGuugAGGUg -3' miRNA: 3'- caUCUGGGCGCA-------CGUCUGGuCC---UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 233365 | 0.69 | 0.880874 |
Target: 5'- cUGGAUCCGCGgaUGCGucGCCGGGAuccggAGCu -3' miRNA: 3'- cAUCUGGGCGC--ACGUc-UGGUCCU-----UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 213226 | 0.68 | 0.88697 |
Target: 5'- -gAGGCCCacguagaugagcaGCGagccGCGGACCAcgucGGAGGCg -3' miRNA: 3'- caUCUGGG-------------CGCa---CGUCUGGU----CCUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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