Results 101 - 120 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14605 | 3' | -55.9 | NC_003521.1 | + | 175794 | 0.69 | 0.851766 |
Target: 5'- -cGGGgCUGCacGCGGGCCAGGAuGCg -3' miRNA: 3'- caUCUgGGCGcaCGUCUGGUCCUuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 149069 | 0.69 | 0.844003 |
Target: 5'- -gGGACCCGCGggGUAGGgUAGGcaGGGUg -3' miRNA: 3'- caUCUGGGCGCa-CGUCUgGUCC--UUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 86370 | 0.7 | 0.827936 |
Target: 5'- --uGACCaacaGCGUGCGGAagGGGAAGa -3' miRNA: 3'- cauCUGGg---CGCACGUCUggUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 110652 | 0.77 | 0.42229 |
Target: 5'- -gAGAUCgCGCGgcagGCAGGCCAGGGcguAGCg -3' miRNA: 3'- caUCUGG-GCGCa---CGUCUGGUCCU---UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 20291 | 0.75 | 0.571115 |
Target: 5'- gGUGGaucucGCCgGCGccaUGCAGcACCAGGAGGCc -3' miRNA: 3'- -CAUC-----UGGgCGC---ACGUC-UGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 46397 | 0.75 | 0.571115 |
Target: 5'- -gGGugCgugggGCGcGCGGGCCAGGAAGCg -3' miRNA: 3'- caUCugGg----CGCaCGUCUGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 149150 | 0.75 | 0.571115 |
Target: 5'- -aGGAgCCCGC-UGCGGaaugcGCCAGGGAGCc -3' miRNA: 3'- caUCU-GGGCGcACGUC-----UGGUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 5807 | 0.74 | 0.590871 |
Target: 5'- cGUAaACCCGCGUccGCggAGGCCAGGggGa -3' miRNA: 3'- -CAUcUGGGCGCA--CG--UCUGGUCCuuCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 211452 | 0.73 | 0.660555 |
Target: 5'- --cGGCCuCGCGgucgggGCAGGCCAuGAGGCg -3' miRNA: 3'- cauCUGG-GCGCa-----CGUCUGGUcCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 167384 | 0.73 | 0.677417 |
Target: 5'- cGUGGugCCgaaagagcucgucgGCGUGCAGGuCgGGGAAGUg -3' miRNA: 3'- -CAUCugGG--------------CGCACGUCU-GgUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 24601 | 0.72 | 0.690244 |
Target: 5'- cGUAGGCCUcgucuGCGUGU--GCCAGGAGGa -3' miRNA: 3'- -CAUCUGGG-----CGCACGucUGGUCCUUCg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 48685 | 0.72 | 0.726265 |
Target: 5'- cGUGGAUCCGCGgacGCcgacggagccgacgAGGCCGGGAgaGGUg -3' miRNA: 3'- -CAUCUGGGCGCa--CG--------------UCUGGUCCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 168796 | 0.72 | 0.738694 |
Target: 5'- -aGGACCUG-GUGCAGGCCAcGcGGCg -3' miRNA: 3'- caUCUGGGCgCACGUCUGGUcCuUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 97297 | 0.71 | 0.766774 |
Target: 5'- cGgcGGCgCGCGUGCGGAUCAGGc--- -3' miRNA: 3'- -CauCUGgGCGCACGUCUGGUCCuucg -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 219898 | 0.71 | 0.766774 |
Target: 5'- --cGACCCGCGUGCgauugAGACCgguccccgGGGAccuGCu -3' miRNA: 3'- cauCUGGGCGCACG-----UCUGG--------UCCUu--CG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 229235 | 0.71 | 0.775918 |
Target: 5'- aGUGGACCCGCG----GGCCGcGGAGGUg -3' miRNA: 3'- -CAUCUGGGCGCacguCUGGU-CCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 196076 | 0.71 | 0.792949 |
Target: 5'- gGUGGACUgGCGcgagagcUGCAGACCccGGAucAGCg -3' miRNA: 3'- -CAUCUGGgCGC-------ACGUCUGGu-CCU--UCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 69715 | 0.7 | 0.802585 |
Target: 5'- cGgcGGCCCugagguacGCGguaacgGCGGGCgGGGAGGCg -3' miRNA: 3'- -CauCUGGG--------CGCa-----CGUCUGgUCCUUCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 5370 | 0.7 | 0.810338 |
Target: 5'- -aGGGCCCGCGcguucuuccauuUGCAGACgGguugcucGGggGCc -3' miRNA: 3'- caUCUGGGCGC------------ACGUCUGgU-------CCuuCG- -5' |
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14605 | 3' | -55.9 | NC_003521.1 | + | 155491 | 0.7 | 0.819645 |
Target: 5'- --cGGCCUGCG-GCGGGCCGcGGGccaaGGCu -3' miRNA: 3'- cauCUGGGCGCaCGUCUGGU-CCU----UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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