miRNA display CGI


Results 41 - 60 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 184160 0.68 0.90052
Target:  5'- --cGACCUG-GUGCGcGAgCGGGAGGUg -3'
miRNA:   3'- cauCUGGGCgCACGU-CUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 155491 0.7 0.819645
Target:  5'- --cGGCCUGCG-GCGGGCCGcGGGccaaGGCu -3'
miRNA:   3'- cauCUGGGCGCaCGUCUGGU-CCU----UCG- -5'
14605 3' -55.9 NC_003521.1 + 20291 0.75 0.571115
Target:  5'- gGUGGaucucGCCgGCGccaUGCAGcACCAGGAGGCc -3'
miRNA:   3'- -CAUC-----UGGgCGC---ACGUC-UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129081 0.68 0.90052
Target:  5'- -cAGACCCucgGCGUacuGCAGGCUguGGGuGGCg -3'
miRNA:   3'- caUCUGGG---CGCA---CGUCUGG--UCCuUCG- -5'
14605 3' -55.9 NC_003521.1 + 110652 0.77 0.42229
Target:  5'- -gAGAUCgCGCGgcagGCAGGCCAGGGcguAGCg -3'
miRNA:   3'- caUCUGG-GCGCa---CGUCUGGUCCU---UCG- -5'
14605 3' -55.9 NC_003521.1 + 190600 0.66 0.946147
Target:  5'- aGUGGcCCCGCGaccugacuucgcgcUcuucggGCGGACCggacAGGAGGCg -3'
miRNA:   3'- -CAUCuGGGCGC--------------A------CGUCUGG----UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 149150 0.75 0.571115
Target:  5'- -aGGAgCCCGC-UGCGGaaugcGCCAGGGAGCc -3'
miRNA:   3'- caUCU-GGGCGcACGUC-----UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 96779 0.67 0.938575
Target:  5'- --cGGCCaugcagaaGCGccGCAGACCggaacgGGGAAGCg -3'
miRNA:   3'- cauCUGGg-------CGCa-CGUCUGG------UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 38260 0.67 0.933818
Target:  5'- --cGGCCCaGgGUcaGCAGccCCAGGAGGCc -3'
miRNA:   3'- cauCUGGG-CgCA--CGUCu-GGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 107907 0.67 0.918184
Target:  5'- -gAGACCCGUaaggaUGUAGACCAacucGGAguGGCc -3'
miRNA:   3'- caUCUGGGCGc----ACGUCUGGU----CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 110876 0.68 0.914813
Target:  5'- --cGGCCCGCG-GCAGaacugcgccgucucgGCCAGGuguucGCg -3'
miRNA:   3'- cauCUGGGCGCaCGUC---------------UGGUCCuu---CG- -5'
14605 3' -55.9 NC_003521.1 + 130045 0.68 0.91252
Target:  5'- gGUGGACCUGa--GCgAGACCcuGGAGGCc -3'
miRNA:   3'- -CAUCUGGGCgcaCG-UCUGGu-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87901 0.68 0.906631
Target:  5'- -aGGACuuGCGcacgcugaacCAGACCuGGGAGCa -3'
miRNA:   3'- caUCUGggCGCac--------GUCUGGuCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 129411 0.68 0.894187
Target:  5'- ---cGCCCGCuUGCAGAaaUgGGGGAGCc -3'
miRNA:   3'- caucUGGGCGcACGUCU--GgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 104803 0.69 0.880873
Target:  5'- -cGGAagcaCCGCGUGCAGGCguaCAGcGAGuGCa -3'
miRNA:   3'- caUCUg---GGCGCACGUCUG---GUC-CUU-CG- -5'
14605 3' -55.9 NC_003521.1 + 18649 0.69 0.86672
Target:  5'- cGUGGGgCCGCacggaccUGCuGGCCAcGGggGCg -3'
miRNA:   3'- -CAUCUgGGCGc------ACGuCUGGU-CCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 149069 0.69 0.844003
Target:  5'- -gGGACCCGCGggGUAGGgUAGGcaGGGUg -3'
miRNA:   3'- caUCUGGGCGCa-CGUCUgGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 196076 0.71 0.792949
Target:  5'- gGUGGACUgGCGcgagagcUGCAGACCccGGAucAGCg -3'
miRNA:   3'- -CAUCUGGgCGC-------ACGUCUGGu-CCU--UCG- -5'
14605 3' -55.9 NC_003521.1 + 97297 0.71 0.766774
Target:  5'- cGgcGGCgCGCGUGCGGAUCAGGc--- -3'
miRNA:   3'- -CauCUGgGCGCACGUCUGGUCCuucg -5'
14605 3' -55.9 NC_003521.1 + 167384 0.73 0.677417
Target:  5'- cGUGGugCCgaaagagcucgucgGCGUGCAGGuCgGGGAAGUg -3'
miRNA:   3'- -CAUCugGG--------------CGCACGUCU-GgUCCUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.