miRNA display CGI


Results 101 - 120 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14605 3' -55.9 NC_003521.1 + 34458 0.67 0.928834
Target:  5'- -cGGGCCUGgGggucgucgccGCAGGCCAgcagcucgcGGAAGCa -3'
miRNA:   3'- caUCUGGGCgCa---------CGUCUGGU---------CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 165958 0.67 0.923622
Target:  5'- --cGugUCGUGcucggGCAGGCUgAGGAAGCg -3'
miRNA:   3'- cauCugGGCGCa----CGUCUGG-UCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 188664 0.67 0.923622
Target:  5'- -cGGACCCGCGguaccgucgcUGaCGGGCgGGGGAuacGCg -3'
miRNA:   3'- caUCUGGGCGC----------AC-GUCUGgUCCUU---CG- -5'
14605 3' -55.9 NC_003521.1 + 120928 0.67 0.938576
Target:  5'- -cGGcuGCCCGCGgcgGCggcuccggcgaGGGgCAGGggGCg -3'
miRNA:   3'- caUC--UGGGCGCa--CG-----------UCUgGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 226350 0.67 0.918185
Target:  5'- --cGcCCCGCGgGUAGcGCCGcGGGAGCg -3'
miRNA:   3'- cauCuGGGCGCaCGUC-UGGU-CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 195616 0.66 0.964437
Target:  5'- --cGGCCCGCcagcuggucgcguuGcUGCAGcuccgagGCCAGGGAGUc -3'
miRNA:   3'- cauCUGGGCG--------------C-ACGUC-------UGGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 216348 0.67 0.918185
Target:  5'- aGUAGAUCCaGCacgcGCuGGCCAGGcaGAGCa -3'
miRNA:   3'- -CAUCUGGG-CGca--CGuCUGGUCC--UUCG- -5'
14605 3' -55.9 NC_003521.1 + 145445 0.67 0.923622
Target:  5'- gGUGGACCUgugcuucgGCGUGCucaaGCaGGGggGCa -3'
miRNA:   3'- -CAUCUGGG--------CGCACGuc--UGgUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 72980 0.67 0.917628
Target:  5'- aGUAGccgacgaGCCCGCG-GCGGucgugcCCGGGggGg -3'
miRNA:   3'- -CAUC-------UGGGCGCaCGUCu-----GGUCCuuCg -5'
14605 3' -55.9 NC_003521.1 + 86608 0.67 0.928834
Target:  5'- -aAGcGCUCGUGguggcgGUAGAgCAGGAAGCc -3'
miRNA:   3'- caUC-UGGGCGCa-----CGUCUgGUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 43425 0.67 0.928834
Target:  5'- -----aCUGCGUGCccGACgAGGAGGCg -3'
miRNA:   3'- caucugGGCGCACGu-CUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 216238 0.69 0.859341
Target:  5'- -gAGGCCUacgaGCGggagGUGGACgAGGAGGCc -3'
miRNA:   3'- caUCUGGG----CGCa---CGUCUGgUCCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 65035 0.69 0.859341
Target:  5'- --uGGCCCGCGUGCAGccCCGGcuaauGAcGCg -3'
miRNA:   3'- cauCUGGGCGCACGUCu-GGUC-----CUuCG- -5'
14605 3' -55.9 NC_003521.1 + 150358 0.69 0.86672
Target:  5'- -gAGGUCUGCGUGCGGACCGuGGucgacuGCu -3'
miRNA:   3'- caUCUGGGCGCACGUCUGGU-CCuu----CG- -5'
14605 3' -55.9 NC_003521.1 + 181312 0.69 0.86672
Target:  5'- -cAGG-CCGCccGCGGGCCAGGgcGCc -3'
miRNA:   3'- caUCUgGGCGcaCGUCUGGUCCuuCG- -5'
14605 3' -55.9 NC_003521.1 + 87704 0.69 0.873191
Target:  5'- -gAGGCCCGUGUuguagauGCAGACCcGGuugAGGUg -3'
miRNA:   3'- caUCUGGGCGCA-------CGUCUGGuCC---UUCG- -5'
14605 3' -55.9 NC_003521.1 + 233365 0.69 0.880874
Target:  5'- cUGGAUCCGCGgaUGCGucGCCGGGAuccggAGCu -3'
miRNA:   3'- cAUCUGGGCGC--ACGUc-UGGUCCU-----UCG- -5'
14605 3' -55.9 NC_003521.1 + 213226 0.68 0.88697
Target:  5'- -gAGGCCCacguagaugagcaGCGagccGCGGACCAcgucGGAGGCg -3'
miRNA:   3'- caUCUGGG-------------CGCa---CGUCUGGU----CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 87631 0.68 0.887637
Target:  5'- -aGGugCCGCc-GCAGGCCucgcacaggcuGGAGGCg -3'
miRNA:   3'- caUCugGGCGcaCGUCUGGu----------CCUUCG- -5'
14605 3' -55.9 NC_003521.1 + 113322 0.68 0.887637
Target:  5'- -cGGACCUGCuggGCcaAGacGCCGGGggGCu -3'
miRNA:   3'- caUCUGGGCGca-CG--UC--UGGUCCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.