miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14607 3' -52.8 NC_003521.1 + 172072 0.69 0.95456
Target:  5'- -uGCGUCAggaccGUCAGCGGCGGcgugaugaaguccGugCGGg -3'
miRNA:   3'- acUGCAGUa----CAGUCGCCGCU-------------UugGCU- -5'
14607 3' -52.8 NC_003521.1 + 97206 0.69 0.954945
Target:  5'- gUGACGUUGUG-CAGCaGGCaGcAGCCGGu -3'
miRNA:   3'- -ACUGCAGUACaGUCG-CCG-CuUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 109664 0.69 0.954945
Target:  5'- aUGAUG-CAgacgUAGCGGCGGAugCGAu -3'
miRNA:   3'- -ACUGCaGUaca-GUCGCCGCUUugGCU- -5'
14607 3' -52.8 NC_003521.1 + 70349 0.69 0.954945
Target:  5'- gGGCGUUgagcuUGUCGGCGGgGuaGAGCCGc -3'
miRNA:   3'- aCUGCAGu----ACAGUCGCCgC--UUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 76695 0.69 0.954945
Target:  5'- cGACGggucCGUG-UAGCGGUGgcACCGGc -3'
miRNA:   3'- aCUGCa---GUACaGUCGCCGCuuUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 88104 0.69 0.958672
Target:  5'- cGGCGaaguUCAUggaGUCGGCGGCcucguAAGCCGAa -3'
miRNA:   3'- aCUGC----AGUA---CAGUCGCCGc----UUUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 161087 0.69 0.965159
Target:  5'- cUGAUGUCgguacgaGUGUCGGCGGCGGugguuuagUCGGg -3'
miRNA:   3'- -ACUGCAG-------UACAGUCGCCGCUuu------GGCU- -5'
14607 3' -52.8 NC_003521.1 + 135254 0.69 0.965479
Target:  5'- cGACGaCA---CGGCGGCGGAcGCCGAc -3'
miRNA:   3'- aCUGCaGUacaGUCGCCGCUU-UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 233618 0.69 0.96827
Target:  5'- cGGCGggGUGcucgagggcaauuUCAGCGGCGgcGCCGu -3'
miRNA:   3'- aCUGCagUAC-------------AGUCGCCGCuuUGGCu -5'
14607 3' -52.8 NC_003521.1 + 1827 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 202054 0.69 0.968569
Target:  5'- cGACGUCuccUCAGCauGGCGGacgacaGACCGGg -3'
miRNA:   3'- aCUGCAGuacAGUCG--CCGCU------UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 72390 0.68 0.971177
Target:  5'- cGGCGUCcucGUCgaucaccAGCGGCGGAggcACUGAg -3'
miRNA:   3'- aCUGCAGua-CAG-------UCGCCGCUU---UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 203664 0.68 0.971177
Target:  5'- uUGugGUCGUccGUCAGCaGGUagaagcaGAAGCCGc -3'
miRNA:   3'- -ACugCAGUA--CAGUCG-CCG-------CUUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 209729 0.68 0.971457
Target:  5'- gGAgGUCGUGcgCAGCGGCagccacGGcAGCCGGa -3'
miRNA:   3'- aCUgCAGUACa-GUCGCCG------CU-UUGGCU- -5'
14607 3' -52.8 NC_003521.1 + 204769 0.68 0.971457
Target:  5'- --cUGUUGUGUCGGCGGCGGGcuuacGgCGAa -3'
miRNA:   3'- acuGCAGUACAGUCGCCGCUU-----UgGCU- -5'
14607 3' -52.8 NC_003521.1 + 165606 0.68 0.971457
Target:  5'- cGAUGUCGUgGUUGGCGGCGu-GCaGAa -3'
miRNA:   3'- aCUGCAGUA-CAGUCGCCGCuuUGgCU- -5'
14607 3' -52.8 NC_003521.1 + 123575 0.68 0.971457
Target:  5'- gUGGCGggAUGgCGGCGGCGccggGAGCCGc -3'
miRNA:   3'- -ACUGCagUACaGUCGCCGC----UUUGGCu -5'
14607 3' -52.8 NC_003521.1 + 14433 0.68 0.973626
Target:  5'- gUGACGUgGUGcacacggcccugCGGCGGCGucAGCCGc -3'
miRNA:   3'- -ACUGCAgUACa-----------GUCGCCGCu-UUGGCu -5'
14607 3' -52.8 NC_003521.1 + 145855 0.68 0.976652
Target:  5'- -cGCGUCucUGggccCGGCGGCGGGcggcGCCGAc -3'
miRNA:   3'- acUGCAGu-ACa---GUCGCCGCUU----UGGCU- -5'
14607 3' -52.8 NC_003521.1 + 203313 0.68 0.976652
Target:  5'- gGACGUCGcugaUGUCcGCGGgccCGAAaacGCCGGg -3'
miRNA:   3'- aCUGCAGU----ACAGuCGCC---GCUU---UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.