miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14608 3' -64 NC_003521.1 + 88663 0.66 0.672125
Target:  5'- gGCCgCCAGGUCggugggCCGGcGGCCCGGc -3'
miRNA:   3'- gCGGaGGUCCGGga----GGCU-CUGGGCCu -5'
14608 3' -64 NC_003521.1 + 92390 0.68 0.551019
Target:  5'- cCGUcgCUCCGccGGCuCCUCCGGGucugguaaACCCGGGu -3'
miRNA:   3'- -GCG--GAGGU--CCG-GGAGGCUC--------UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 94046 0.67 0.650646
Target:  5'- cCGCCuucugUCCAGGCCggUUCCaaagcggcgugucuGAGucACCCGGAg -3'
miRNA:   3'- -GCGG-----AGGUCCGG--GAGG--------------CUC--UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 109773 0.69 0.523773
Target:  5'- cCGCgUCCgAGGCCCgccgCCGccGCCCaGGAg -3'
miRNA:   3'- -GCGgAGG-UCCGGGa---GGCucUGGG-CCU- -5'
14608 3' -64 NC_003521.1 + 112678 0.7 0.479593
Target:  5'- uGCCUgCAGGCCUucgCCGAG-CgCGGGc -3'
miRNA:   3'- gCGGAgGUCCGGGa--GGCUCuGgGCCU- -5'
14608 3' -64 NC_003521.1 + 112794 0.66 0.672125
Target:  5'- cCGCCUaCGGGCacgcgCUCUGGGAcggccgcgacccCCCGGAu -3'
miRNA:   3'- -GCGGAgGUCCGg----GAGGCUCU------------GGGCCU- -5'
14608 3' -64 NC_003521.1 + 115880 0.67 0.625353
Target:  5'- gGCCgcguuaaagUCCAGGCCCgggaAGGCCUGGGu -3'
miRNA:   3'- gCGG---------AGGUCCGGGaggcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 118122 0.72 0.352423
Target:  5'- cCGCCUCCAGcCCCgCCGAGACgcccaugaucaCCGGc -3'
miRNA:   3'- -GCGGAGGUCcGGGaGGCUCUG-----------GGCCu -5'
14608 3' -64 NC_003521.1 + 119776 0.68 0.569422
Target:  5'- gGCCUCCAGGCugcgguccacCUUCCGGcGCCagCGGGg -3'
miRNA:   3'- gCGGAGGUCCG----------GGAGGCUcUGG--GCCU- -5'
14608 3' -64 NC_003521.1 + 123340 0.69 0.523773
Target:  5'- cCGCCggaCAGGCCCgucgCCGGGugUggaGGAg -3'
miRNA:   3'- -GCGGag-GUCCGGGa---GGCUCugGg--CCU- -5'
14608 3' -64 NC_003521.1 + 124927 0.77 0.183202
Target:  5'- aGCUgacCCAGGCCUUCCcGGGCCUGGAc -3'
miRNA:   3'- gCGGa--GGUCCGGGAGGcUCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 127235 0.67 0.644092
Target:  5'- cCGCCcCCGuuGCCC-CCGAGGCCCa-- -3'
miRNA:   3'- -GCGGaGGUc-CGGGaGGCUCUGGGccu -5'
14608 3' -64 NC_003521.1 + 133453 0.66 0.6628
Target:  5'- aCGCaaCUCCAGGaCCU-CGuGACCUGGGu -3'
miRNA:   3'- -GCG--GAGGUCCgGGAgGCuCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 134718 0.66 0.709088
Target:  5'- gGCCgCCAcGCCCUgcCCGAGGCCuugCGGu -3'
miRNA:   3'- gCGGaGGUcCGGGA--GGCUCUGG---GCCu -5'
14608 3' -64 NC_003521.1 + 137856 0.7 0.470974
Target:  5'- cCGCCccgCCAGaGCCCcgacgcCCGAGcGCCUGGAc -3'
miRNA:   3'- -GCGGa--GGUC-CGGGa-----GGCUC-UGGGCCU- -5'
14608 3' -64 NC_003521.1 + 138106 0.69 0.532801
Target:  5'- aCGUCUUCuGcGCCgucuuCUCCGAGACCUGGc -3'
miRNA:   3'- -GCGGAGGuC-CGG-----GAGGCUCUGGGCCu -5'
14608 3' -64 NC_003521.1 + 140824 0.68 0.560199
Target:  5'- gCGCUUCUcGGCCUUCCGucacgacGugCUGGAg -3'
miRNA:   3'- -GCGGAGGuCCGGGAGGCu------CugGGCCU- -5'
14608 3' -64 NC_003521.1 + 142267 0.67 0.634724
Target:  5'- gGCCgacUCGGGCUCgggCUGGGACCCGc- -3'
miRNA:   3'- gCGGa--GGUCCGGGa--GGCUCUGGGCcu -5'
14608 3' -64 NC_003521.1 + 148892 0.66 0.710003
Target:  5'- cCGCCgCCGGGUCCaccgcaucgccgccgCCGuccuGGAUCCGGGg -3'
miRNA:   3'- -GCGGaGGUCCGGGa--------------GGC----UCUGGGCCU- -5'
14608 3' -64 NC_003521.1 + 152161 0.68 0.573121
Target:  5'- cCGCCggcCCAccgaccuggcGGCCCUCUgcgccucgcugggcuGuGACCCGGAc -3'
miRNA:   3'- -GCGGa--GGU----------CCGGGAGG---------------CuCUGGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.