Results 61 - 66 of 66 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 170869 | 0.73 | 0.940175 |
|
Target: 5'- cGCGGGGGCGGgcGCGGGUG-GUCAGGc- -3' miRNA: 3'- -UGCCUCUGCU--UGUCCAUgUAGUCUag -5' |
|||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 185732 | 0.74 | 0.893774 |
|
Target: 5'- uGCGGAGGugaucgcCGAGCGGGUGCGcCGGAg- -3' miRNA: 3'- -UGCCUCU-------GCUUGUCCAUGUaGUCUag -5' |
|||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 179784 | 0.74 | 0.918681 |
|
Target: 5'- gACGGAGGCGuccaccuGGCGGacgaaGUGCGUCAGGUUg -3' miRNA: 3'- -UGCCUCUGC-------UUGUC-----CAUGUAGUCUAG- -5' |
|||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 126697 | 0.76 | 0.842197 |
|
Target: 5'- gAUGGAGGCGAACAugccGGUGag-CAGAUCc -3' miRNA: 3'- -UGCCUCUGCUUGU----CCAUguaGUCUAG- -5' |
|||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 210121 | 0.76 | 0.842197 |
|
Target: 5'- -aGGAcGugGGACAGGUACgAUCAGAc- -3' miRNA: 3'- ugCCU-CugCUUGUCCAUG-UAGUCUag -5' |
|||||||
| 14610 | 3' | -50.1 | NC_003521.1 | + | 220751 | 1.09 | 0.016647 |
|
Target: 5'- cACGGAGACGAACAGGUACAUCAGAUCc -3' miRNA: 3'- -UGCCUCUGCUUGUCCAUGUAGUCUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home