miRNA display CGI


Results 41 - 60 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 3' -50.1 NC_003521.1 + 101729 0.72 0.964366
Target:  5'- gGCGGGGGCGAgAUGGGgaagGCcggCAGGUCg -3'
miRNA:   3'- -UGCCUCUGCU-UGUCCa---UGua-GUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 100441 0.7 0.980705
Target:  5'- gACGGGGGCGGAgAGGa--GUCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUUgUCCaugUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 96594 0.67 0.998817
Target:  5'- cGCGcccauGAUGAGCAGGcagGCGUCGGcgCa -3'
miRNA:   3'- -UGCcu---CUGCUUGUCCa--UGUAGUCuaG- -5'
14610 3' -50.1 NC_003521.1 + 91669 0.71 0.976051
Target:  5'- gACGGAcGACGAGguGGccacgGCGUCguGGAUCu -3'
miRNA:   3'- -UGCCU-CUGCUUguCCa----UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 91450 0.67 0.998794
Target:  5'- cACGGGgguGACGAggcgcagACAGGUGCG-CAGGa- -3'
miRNA:   3'- -UGCCU---CUGCU-------UGUCCAUGUaGUCUag -5'
14610 3' -50.1 NC_003521.1 + 86656 0.66 0.999346
Target:  5'- gGCGGccGACG-ACAGGUugA--GGAUCa -3'
miRNA:   3'- -UGCCu-CUGCuUGUCCAugUagUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 82024 0.68 0.99605
Target:  5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3'
miRNA:   3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5'
14610 3' -50.1 NC_003521.1 + 76990 0.67 0.997575
Target:  5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3'
miRNA:   3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5'
14610 3' -50.1 NC_003521.1 + 72536 0.66 0.999346
Target:  5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3'
miRNA:   3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5'
14610 3' -50.1 NC_003521.1 + 70981 0.67 0.998573
Target:  5'- gACGGAGAUGAGaacCAGGaacUACGUaCGGAc- -3'
miRNA:   3'- -UGCCUCUGCUU---GUCC---AUGUA-GUCUag -5'
14610 3' -50.1 NC_003521.1 + 69456 0.66 0.999024
Target:  5'- uGCGcGAGGCGcagGGCAGGaucACGUCgaAGGUCa -3'
miRNA:   3'- -UGC-CUCUGC---UUGUCCa--UGUAG--UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 67866 0.66 0.999346
Target:  5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3'
miRNA:   3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 63168 0.66 0.99947
Target:  5'- cCGGAGACuGGACGuGUGCAacgCAGAg- -3'
miRNA:   3'- uGCCUCUG-CUUGUcCAUGUa--GUCUag -5'
14610 3' -50.1 NC_003521.1 + 52759 0.69 0.991833
Target:  5'- -gGGAGACGAGCGGcucUACcgCGGcAUCg -3'
miRNA:   3'- ugCCUCUGCUUGUCc--AUGuaGUC-UAG- -5'
14610 3' -50.1 NC_003521.1 + 52040 0.66 0.999346
Target:  5'- gGCGGggacccAGACGAGCAGcaGCggCAGAUg -3'
miRNA:   3'- -UGCC------UCUGCUUGUCcaUGuaGUCUAg -5'
14610 3' -50.1 NC_003521.1 + 49967 0.66 0.999573
Target:  5'- -aGGAgGACGAgcgGCGGGUGgGUCgagggagccGGGUCg -3'
miRNA:   3'- ugCCU-CUGCU---UGUCCAUgUAG---------UCUAG- -5'
14610 3' -50.1 NC_003521.1 + 45720 0.67 0.998817
Target:  5'- gGCGG-GGCGucuGCGGG-ACG-CGGGUCa -3'
miRNA:   3'- -UGCCuCUGCu--UGUCCaUGUaGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 44241 0.67 0.997575
Target:  5'- cUGuuGGCGAGCAGGUcggGCGUCGGGg- -3'
miRNA:   3'- uGCcuCUGCUUGUCCA---UGUAGUCUag -5'
14610 3' -50.1 NC_003521.1 + 35210 0.66 0.999346
Target:  5'- -aGGGGGCGcGCGGG----UCGGAUCg -3'
miRNA:   3'- ugCCUCUGCuUGUCCauguAGUCUAG- -5'
14610 3' -50.1 NC_003521.1 + 32440 0.67 0.998817
Target:  5'- gACGGuuACGGAUGGG--CGUCAGAUa -3'
miRNA:   3'- -UGCCucUGCUUGUCCauGUAGUCUAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.