Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14610 | 3' | -50.1 | NC_003521.1 | + | 35210 | 0.66 | 0.999346 |
Target: 5'- -aGGGGGCGcGCGGG----UCGGAUCg -3' miRNA: 3'- ugCCUCUGCuUGUCCauguAGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 181406 | 0.7 | 0.984648 |
Target: 5'- gACGGAGGUGAcCAGGaagAUGUCAGGUUg -3' miRNA: 3'- -UGCCUCUGCUuGUCCa--UGUAGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 28091 | 0.7 | 0.984648 |
Target: 5'- gGCGGGGAagcCGAGCAGGcGCucgcccaAGAUCg -3' miRNA: 3'- -UGCCUCU---GCUUGUCCaUGuag----UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 218040 | 0.71 | 0.970623 |
Target: 5'- gGCGGcGGCGuccGCAGGUAgAUgAGGUCc -3' miRNA: 3'- -UGCCuCUGCu--UGUCCAUgUAgUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 67866 | 0.66 | 0.999346 |
Target: 5'- aGCGGuugGGGCgGAACGGGaggagACGacUCGGAUCu -3' miRNA: 3'- -UGCC---UCUG-CUUGUCCa----UGU--AGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 101729 | 0.72 | 0.964366 |
Target: 5'- gGCGGGGGCGAgAUGGGgaagGCcggCAGGUCg -3' miRNA: 3'- -UGCCUCUGCU-UGUCCa---UGua-GUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 72536 | 0.66 | 0.999346 |
Target: 5'- uGCGGAGGCGGcgGCGacGGUGuCGUCGucUCg -3' miRNA: 3'- -UGCCUCUGCU--UGU--CCAU-GUAGUcuAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 82024 | 0.68 | 0.99605 |
Target: 5'- gACGGuGACGuAGCGGGUGCuauGGGUg -3' miRNA: 3'- -UGCCuCUGC-UUGUCCAUGuagUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 186401 | 0.68 | 0.996628 |
Target: 5'- aGCGGcGGCagcaguGCAGGUAgAUCAGGUa -3' miRNA: 3'- -UGCCuCUGcu----UGUCCAUgUAGUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 214045 | 0.68 | 0.996628 |
Target: 5'- cCGGuGGcCGGACAGGUaacugaACAUgAGGUCc -3' miRNA: 3'- uGCCuCU-GCUUGUCCA------UGUAgUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 69456 | 0.66 | 0.999024 |
Target: 5'- uGCGcGAGGCGcagGGCAGGaucACGUCgaAGGUCa -3' miRNA: 3'- -UGC-CUCUGC---UUGUCCa--UGUAG--UCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 32440 | 0.67 | 0.998817 |
Target: 5'- gACGGuuACGGAUGGG--CGUCAGAUa -3' miRNA: 3'- -UGCCucUGCUUGUCCauGUAGUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 70981 | 0.67 | 0.998573 |
Target: 5'- gACGGAGAUGAGaacCAGGaacUACGUaCGGAc- -3' miRNA: 3'- -UGCCUCUGCUU---GUCC---AUGUA-GUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 101765 | 0.67 | 0.998573 |
Target: 5'- gGCGGAugGugGugcAGCAGGuUGCG-CAGGUCa -3' miRNA: 3'- -UGCCU--CugC---UUGUCC-AUGUaGUCUAG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 170532 | 0.67 | 0.998289 |
Target: 5'- gACGGGGACGGgggGCAGGaggguuuaugUACA-CAGcgCg -3' miRNA: 3'- -UGCCUCUGCU---UGUCC----------AUGUaGUCuaG- -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 119027 | 0.67 | 0.998289 |
Target: 5'- cACGGAuuCGGAUAGGgcgggcgGCGUCGGGg- -3' miRNA: 3'- -UGCCUcuGCUUGUCCa------UGUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 110963 | 0.67 | 0.998289 |
Target: 5'- cGCGGAGgaaGCGGACGGGUcGCccgUAGGUg -3' miRNA: 3'- -UGCCUC---UGCUUGUCCA-UGua-GUCUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 169454 | 0.67 | 0.997958 |
Target: 5'- aGCGGgucgccguGGACGAACAGGUAgGUgGuGGUg -3' miRNA: 3'- -UGCC--------UCUGCUUGUCCAUgUAgU-CUAg -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 129120 | 0.66 | 0.999346 |
Target: 5'- -aGGucuCGcGCAGGUACGUCAGGc- -3' miRNA: 3'- ugCCucuGCuUGUCCAUGUAGUCUag -5' |
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14610 | 3' | -50.1 | NC_003521.1 | + | 76990 | 0.67 | 0.997575 |
Target: 5'- gGCGGcGAUGGGCAGGcacgGCAUCAu--- -3' miRNA: 3'- -UGCCuCUGCUUGUCCa---UGUAGUcuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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