miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14610 5' -54.3 NC_003521.1 + 220793 1.12 0.004008
Target:  5'- gGCGCCCUGGAUGUAGCUCUCGUACUCg -3'
miRNA:   3'- -CGCGGGACCUACAUCGAGAGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 32990 0.66 0.983226
Target:  5'- -aGCCCUGGcgGaugaagccccgcaGGCUCUCGgccaGCUUg -3'
miRNA:   3'- cgCGGGACCuaCa------------UCGAGAGCa---UGAG- -5'
14610 5' -54.3 NC_003521.1 + 129249 0.66 0.982069
Target:  5'- cGCGCggcaCCUGGAUGUGGaagagcaUCUugccCGUGgUCa -3'
miRNA:   3'- -CGCG----GGACCUACAUCg------AGA----GCAUgAG- -5'
14610 5' -54.3 NC_003521.1 + 63491 0.66 0.977778
Target:  5'- aGCGUCCUGGAccgGgcGCUgaUCGacaaaaUGCUCa -3'
miRNA:   3'- -CGCGGGACCUa--CauCGAg-AGC------AUGAG- -5'
14610 5' -54.3 NC_003521.1 + 47398 0.66 0.977778
Target:  5'- gGCGCUgcgcgagcggagCUGGAUGUAGCaucgCUCGgGC-Ca -3'
miRNA:   3'- -CGCGG------------GACCUACAUCGa---GAGCaUGaG- -5'
14610 5' -54.3 NC_003521.1 + 213117 0.66 0.975368
Target:  5'- aCGCgCUGGGUGUGGCg-UgGUGCg- -3'
miRNA:   3'- cGCGgGACCUACAUCGagAgCAUGag -5'
14610 5' -54.3 NC_003521.1 + 38716 0.66 0.975368
Target:  5'- gGCGUCCUGG-UGgcGCUacuuaagcgCGUGCUg -3'
miRNA:   3'- -CGCGGGACCuACauCGAga-------GCAUGAg -5'
14610 5' -54.3 NC_003521.1 + 44642 0.67 0.968219
Target:  5'- uGCGCCUgUGGGUGUuggagaagugcaaccGGCUCUgcgacgaccUGUACUUc -3'
miRNA:   3'- -CGCGGG-ACCUACA---------------UCGAGA---------GCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 82302 0.67 0.967001
Target:  5'- uGUGCgCCUGGAUGUuGCgCUUGUAg-- -3'
miRNA:   3'- -CGCG-GGACCUACAuCGaGAGCAUgag -5'
14610 5' -54.3 NC_003521.1 + 99919 0.67 0.965112
Target:  5'- -aGCCCgUGGAgguagugguacuucaUGUAGCUCagCGU-CUCg -3'
miRNA:   3'- cgCGGG-ACCU---------------ACAUCGAGa-GCAuGAG- -5'
14610 5' -54.3 NC_003521.1 + 172560 0.67 0.963812
Target:  5'- aUGCUggGGAUGUugaagggcaGGUUCUUGUACUCc -3'
miRNA:   3'- cGCGGgaCCUACA---------UCGAGAGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 67930 0.75 0.659903
Target:  5'- cCGCCCUGGAcaUGgcccugGGCUCUUG-GCUCu -3'
miRNA:   3'- cGCGGGACCU--ACa-----UCGAGAGCaUGAG- -5'
14610 5' -54.3 NC_003521.1 + 53917 0.72 0.815635
Target:  5'- gGCGCCCcccuUGGAcgucagGUAGCUggugaucuugugcugCUCGUACUUg -3'
miRNA:   3'- -CGCGGG----ACCUa-----CAUCGA---------------GAGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 39603 0.71 0.829097
Target:  5'- cUGCCCUGGGUGgcGGCgUCUCGcaaUGCUUu -3'
miRNA:   3'- cGCGGGACCUACa-UCG-AGAGC---AUGAG- -5'
14610 5' -54.3 NC_003521.1 + 156637 0.7 0.875387
Target:  5'- aCGCCCUGGGcuuc-CUCuUCGUGCUCg -3'
miRNA:   3'- cGCGGGACCUacaucGAG-AGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 145437 0.7 0.889188
Target:  5'- gGCGCCUcggUGGAccUGU-GCUUcggCGUGCUCa -3'
miRNA:   3'- -CGCGGG---ACCU--ACAuCGAGa--GCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 83713 0.7 0.895761
Target:  5'- gGCGUCCaagGGGUccagGGC-CUCGUGCUCc -3'
miRNA:   3'- -CGCGGGa--CCUAca--UCGaGAGCAUGAG- -5'
14610 5' -54.3 NC_003521.1 + 84355 0.69 0.914129
Target:  5'- aGCGCcuccuccgccuCCUGGAUGUAGCUgUgGUAg-- -3'
miRNA:   3'- -CGCG-----------GGACCUACAUCGAgAgCAUgag -5'
14610 5' -54.3 NC_003521.1 + 35838 0.66 0.982069
Target:  5'- cGCGCCgaGGAUGUagAGUUCaUCGcggGCg- -3'
miRNA:   3'- -CGCGGgaCCUACA--UCGAG-AGCa--UGag -5'
14610 5' -54.3 NC_003521.1 + 97411 0.71 0.825772
Target:  5'- -aGCCCUGGcccaggcgaaAGCUCUCGUcGCUCa -3'
miRNA:   3'- cgCGGGACCuaca------UCGAGAGCA-UGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.