Results 41 - 50 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14612 | 3' | -53.3 | NC_003521.1 | + | 19944 | 0.79 | 0.470882 |
Target: 5'- -gGGCGAgaUCGUGGUG-AGGUGGCCGGg -3' miRNA: 3'- caCCGCU--AGUACCGCaUCUACUGGCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 122721 | 0.75 | 0.682561 |
Target: 5'- -aGGCGGUCGUGGuCGUGGGcgacggcgccgccgaUGGCUGAc -3' miRNA: 3'- caCCGCUAGUACC-GCAUCU---------------ACUGGCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 227969 | 0.75 | 0.732019 |
Target: 5'- gGUGGCGAguaauaaCAacacgagcccccaacUGGCGUAGGUGGCCa- -3' miRNA: 3'- -CACCGCUa------GU---------------ACCGCAUCUACUGGcu -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 199523 | 0.73 | 0.793876 |
Target: 5'- uGUGGCGAagccCAccguacagcUGGaguaGUAGAUGACCGAg -3' miRNA: 3'- -CACCGCUa---GU---------ACCg---CAUCUACUGGCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 101839 | 0.73 | 0.793876 |
Target: 5'- gGUGGCGGgcUCcgGGuUGUGGAUGGCgGAc -3' miRNA: 3'- -CACCGCU--AGuaCC-GCAUCUACUGgCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 229069 | 0.71 | 0.901931 |
Target: 5'- -aGGCaGUCAcccaggcGGCGUGGAUGGCCa- -3' miRNA: 3'- caCCGcUAGUa------CCGCAUCUACUGGcu -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 136024 | 0.7 | 0.908087 |
Target: 5'- -cGGgGAUCAgcgaGGUGgcGGUGAUCGAg -3' miRNA: 3'- caCCgCUAGUa---CCGCauCUACUGGCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 108032 | 0.7 | 0.925164 |
Target: 5'- -cGGCG-UCAggcGGCGgcgGGAUGACgCGAc -3' miRNA: 3'- caCCGCuAGUa--CCGCa--UCUACUG-GCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 230231 | 0.69 | 0.944221 |
Target: 5'- cGUGGUGAUCGUaagccccGuaGUGGAUGccGCCGAu -3' miRNA: 3'- -CACCGCUAGUA-------CcgCAUCUAC--UGGCU- -5' |
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14612 | 3' | -53.3 | NC_003521.1 | + | 98217 | 0.66 | 0.992432 |
Target: 5'- -cGGCGggCAgcGGCGUGGGaGGCgGGg -3' miRNA: 3'- caCCGCuaGUa-CCGCAUCUaCUGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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