miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 101839 0.73 0.793876
Target:  5'- gGUGGCGGgcUCcgGGuUGUGGAUGGCgGAc -3'
miRNA:   3'- -CACCGCU--AGuaCC-GCAUCUACUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 102853 0.73 0.793876
Target:  5'- -gGGCGccCGUGGCGUAGGUcugGGCCGu -3'
miRNA:   3'- caCCGCuaGUACCGCAUCUA---CUGGCu -5'
14612 3' -53.3 NC_003521.1 + 105865 0.68 0.967099
Target:  5'- aGUGGCgcgugcccacGAUCAgGGCGcAGAUG-CCGGg -3'
miRNA:   3'- -CACCG----------CUAGUaCCGCaUCUACuGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108032 0.7 0.925164
Target:  5'- -cGGCG-UCAggcGGCGgcgGGAUGACgCGAc -3'
miRNA:   3'- caCCGCuAGUa--CCGCa--UCUACUG-GCU- -5'
14612 3' -53.3 NC_003521.1 + 108885 0.66 0.985816
Target:  5'- -aGGCGAUauaucagguaaAUGGCcacGAUGGCCGAc -3'
miRNA:   3'- caCCGCUAg----------UACCGcauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 108948 0.66 0.992432
Target:  5'- -cGGCuGUCgGUGGCGUcuAUGACCa- -3'
miRNA:   3'- caCCGcUAG-UACCGCAucUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 116469 0.68 0.963903
Target:  5'- cGUGGUGGgacaCGUGGCGgcGAUGAa-GAg -3'
miRNA:   3'- -CACCGCUa---GUACCGCauCUACUggCU- -5'
14612 3' -53.3 NC_003521.1 + 122721 0.75 0.682561
Target:  5'- -aGGCGGUCGUGGuCGUGGGcgacggcgccgccgaUGGCUGAc -3'
miRNA:   3'- caCCGCUAGUACC-GCAUCU---------------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 136024 0.7 0.908087
Target:  5'- -cGGgGAUCAgcgaGGUGgcGGUGAUCGAg -3'
miRNA:   3'- caCCgCUAGUa---CCGCauCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 143060 0.66 0.985816
Target:  5'- aUGGUGGUgGUGGCGccGGUGGCg-- -3'
miRNA:   3'- cACCGCUAgUACCGCauCUACUGgcu -5'
14612 3' -53.3 NC_003521.1 + 147402 0.67 0.97548
Target:  5'- aUGGCGGaucgCGUGGCGgugaGGAcGACCa- -3'
miRNA:   3'- cACCGCUa---GUACCGCa---UCUaCUGGcu -5'
14612 3' -53.3 NC_003521.1 + 160572 0.66 0.991014
Target:  5'- aGUGGUGGUCGUGGUuucuuuuuuggguuGUuuGGAUGcUCGAu -3'
miRNA:   3'- -CACCGCUAGUACCG--------------CA--UCUACuGGCU- -5'
14612 3' -53.3 NC_003521.1 + 164849 0.66 0.988714
Target:  5'- -cGGCGAgggccgcuccucgUCGggGGUGUguaacuacgAGGUGGCCGAg -3'
miRNA:   3'- caCCGCU-------------AGUa-CCGCA---------UCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 167000 0.66 0.985816
Target:  5'- -gGGCGGaguUGGCGUAGAaGGuCCGGu -3'
miRNA:   3'- caCCGCUaguACCGCAUCUaCU-GGCU- -5'
14612 3' -53.3 NC_003521.1 + 167728 0.69 0.956871
Target:  5'- -cGGUGGauugCGUGGCGcUGcGGUGGCCGGc -3'
miRNA:   3'- caCCGCUa---GUACCGC-AU-CUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 168100 0.67 0.980124
Target:  5'- -cGGCGAagAccgaggaGGCGUGGAUcGCCGAg -3'
miRNA:   3'- caCCGCUagUa------CCGCAUCUAcUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 168485 0.66 0.988853
Target:  5'- -aGGuCGAUCAUgGGCGgcGA-GACgGAg -3'
miRNA:   3'- caCC-GCUAGUA-CCGCauCUaCUGgCU- -5'
14612 3' -53.3 NC_003521.1 + 173466 0.69 0.953027
Target:  5'- -cGGCGGUaGUGGCGUcGAU-ACCGGc -3'
miRNA:   3'- caCCGCUAgUACCGCAuCUAcUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 195354 0.68 0.972882
Target:  5'- gGUGGUGggCcgGGUGaAGGUGAcgcCCGAg -3'
miRNA:   3'- -CACCGCuaGuaCCGCaUCUACU---GGCU- -5'
14612 3' -53.3 NC_003521.1 + 199463 0.68 0.972882
Target:  5'- cUGGCGcgCGUaGGUgcgacgGUGGAUGACgCGAu -3'
miRNA:   3'- cACCGCuaGUA-CCG------CAUCUACUG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.