miRNA display CGI


Results 41 - 50 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 3' -53.3 NC_003521.1 + 102853 0.73 0.793876
Target:  5'- -gGGCGccCGUGGCGUAGGUcugGGCCGu -3'
miRNA:   3'- caCCGCuaGUACCGCAUCUA---CUGGCu -5'
14612 3' -53.3 NC_003521.1 + 199523 0.73 0.793876
Target:  5'- uGUGGCGAagccCAccguacagcUGGaguaGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUa---GU---------ACCg---CAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 81094 0.74 0.737834
Target:  5'- -cGGCGAUgGgcuUGuCGUAGAUGGCCGAg -3'
miRNA:   3'- caCCGCUAgU---ACcGCAUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 227969 0.75 0.732019
Target:  5'- gGUGGCGAguaauaaCAacacgagcccccaacUGGCGUAGGUGGCCa- -3'
miRNA:   3'- -CACCGCUa------GU---------------ACCGCAUCUACUGGcu -5'
14612 3' -53.3 NC_003521.1 + 49881 0.75 0.69855
Target:  5'- aUGGCGGUCGUGGCGUGcGUGuGgCGAc -3'
miRNA:   3'- cACCGCUAGUACCGCAUcUAC-UgGCU- -5'
14612 3' -53.3 NC_003521.1 + 122721 0.75 0.682561
Target:  5'- -aGGCGGUCGUGGuCGUGGGcgacggcgccgccgaUGGCUGAc -3'
miRNA:   3'- caCCGCUAGUACC-GCAUCU---------------ACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 217918 0.76 0.665458
Target:  5'- cGUGGUGGUCcuUGGCGUacugcugcagccacAGGUGACCGc -3'
miRNA:   3'- -CACCGCUAGu-ACCGCA--------------UCUACUGGCu -5'
14612 3' -53.3 NC_003521.1 + 19944 0.79 0.470882
Target:  5'- -gGGCGAgaUCGUGGUG-AGGUGGCCGGg -3'
miRNA:   3'- caCCGCU--AGUACCGCaUCUACUGGCU- -5'
14612 3' -53.3 NC_003521.1 + 18738 0.86 0.226296
Target:  5'- -cGGCGAUCGUGGCGgcGGUGgcGCCGAc -3'
miRNA:   3'- caCCGCUAGUACCGCauCUAC--UGGCU- -5'
14612 3' -53.3 NC_003521.1 + 221042 1.1 0.007531
Target:  5'- cGUGGCGAUCAUGGCGUAGAUGACCGAg -3'
miRNA:   3'- -CACCGCUAGUACCGCAUCUACUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.