miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 5' -60.8 NC_003521.1 + 199462 0.66 0.823751
Target:  5'- aCUGGCgCGCGUAgguGCGACgGUGGaugaCGCg -3'
miRNA:   3'- -GACCG-GCGCGU---CGCUG-UACCagg-GCG- -5'
14613 5' -60.8 NC_003521.1 + 53193 0.66 0.823751
Target:  5'- aUGGCCagcgGCGC-GCGGCccGG-CUCGCc -3'
miRNA:   3'- gACCGG----CGCGuCGCUGuaCCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 48652 0.66 0.822951
Target:  5'- gUGGCCGCGacCGGCGcugACAccgcagaccuacgUGGaUCCGCg -3'
miRNA:   3'- gACCGGCGC--GUCGC---UGU-------------ACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 36707 0.66 0.820542
Target:  5'- cCUGGCCcgagcagguggagGCGCAGUGGCgccaccaggugcacGUGG-CCCa- -3'
miRNA:   3'- -GACCGG-------------CGCGUCGCUG--------------UACCaGGGcg -5'
14613 5' -60.8 NC_003521.1 + 136406 0.66 0.815684
Target:  5'- -gGGCCGCGUgugaGGCaGACAgccgUCCGCg -3'
miRNA:   3'- gaCCGGCGCG----UCG-CUGUaccaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 224423 0.66 0.815684
Target:  5'- -cGGCCagGCGCuGCGugGUGGgCgaGCg -3'
miRNA:   3'- gaCCGG--CGCGuCGCugUACCaGggCG- -5'
14613 5' -60.8 NC_003521.1 + 186301 0.66 0.815684
Target:  5'- -gGGCC-C-CAGCGGCGccgugcagauccUGGUCCaCGCc -3'
miRNA:   3'- gaCCGGcGcGUCGCUGU------------ACCAGG-GCG- -5'
14613 5' -60.8 NC_003521.1 + 150569 0.66 0.815684
Target:  5'- gUGGCgGCgGCGGCGGCGcGGcUCCUc- -3'
miRNA:   3'- gACCGgCG-CGUCGCUGUaCC-AGGGcg -5'
14613 5' -60.8 NC_003521.1 + 218092 0.66 0.815684
Target:  5'- -cGGCgGCGcCGGUGACGaugaGGgcguagagCCCGCu -3'
miRNA:   3'- gaCCGgCGC-GUCGCUGUa---CCa-------GGGCG- -5'
14613 5' -60.8 NC_003521.1 + 33948 0.66 0.815684
Target:  5'- -cGGCgUGCGCGGCGAgCAgcUGGagcggaguUCCCGa -3'
miRNA:   3'- gaCCG-GCGCGUCGCU-GU--ACC--------AGGGCg -5'
14613 5' -60.8 NC_003521.1 + 231895 0.66 0.815684
Target:  5'- gCUGGguaacCUGCgGCAGCGGCucuucUCCCGCg -3'
miRNA:   3'- -GACC-----GGCG-CGUCGCUGuacc-AGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 28148 0.66 0.815684
Target:  5'- cCUGGCgaCG-GCGGCGAcCAUG--CCCGCg -3'
miRNA:   3'- -GACCG--GCgCGUCGCU-GUACcaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 130939 0.66 0.815684
Target:  5'- -aGGUCGCacGCAGUuACugGUGGcCCCGCc -3'
miRNA:   3'- gaCCGGCG--CGUCGcUG--UACCaGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 190522 0.66 0.815684
Target:  5'- cCUGGCUgaggagcgagGUGCGGCGGCAgcagcggcGGaCCCGg -3'
miRNA:   3'- -GACCGG----------CGCGUCGCUGUa-------CCaGGGCg -5'
14613 5' -60.8 NC_003521.1 + 72024 0.66 0.815684
Target:  5'- aUGcGCCGCGUGGCcuGCAccaGGUCCUGg -3'
miRNA:   3'- gAC-CGGCGCGUCGc-UGUa--CCAGGGCg -5'
14613 5' -60.8 NC_003521.1 + 58408 0.66 0.814869
Target:  5'- -cGGCCGCGUgauGCGGC--GGUUgacgaagCCGCa -3'
miRNA:   3'- gaCCGGCGCGu--CGCUGuaCCAG-------GGCG- -5'
14613 5' -60.8 NC_003521.1 + 126741 0.66 0.813235
Target:  5'- --aGCCGUguacagcacgaacuGCAGCGACGUGaaGUCCgGCn -3'
miRNA:   3'- gacCGGCG--------------CGUCGCUGUAC--CAGGgCG- -5'
14613 5' -60.8 NC_003521.1 + 17763 0.66 0.813235
Target:  5'- aCUGGCCGUaccGcCGGCGGCGgacGGUCaggugaaggaaacaUCGCa -3'
miRNA:   3'- -GACCGGCG---C-GUCGCUGUa--CCAG--------------GGCG- -5'
14613 5' -60.8 NC_003521.1 + 155439 0.66 0.810773
Target:  5'- gCUGGCCGacccgcugggcgaguCGCAGCagcccgucGAgGucUGGUUCCGCc -3'
miRNA:   3'- -GACCGGC---------------GCGUCG--------CUgU--ACCAGGGCG- -5'
14613 5' -60.8 NC_003521.1 + 938 0.66 0.80747
Target:  5'- -aGGCCGCu--GCGACuggaacGUGGUCCgcUGCa -3'
miRNA:   3'- gaCCGGCGcguCGCUG------UACCAGG--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.