miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 5' -56.4 NC_003521.1 + 175340 0.66 0.962216
Target:  5'- uCGCCUGCcUGGUCaccUCGUccagggugCGUUGggucUCCUg -3'
miRNA:   3'- -GCGGACGcACCAG---AGCA--------GCAAC----AGGA- -5'
14614 5' -56.4 NC_003521.1 + 195946 0.66 0.958802
Target:  5'- cCGuCCUGCGUGGgccacaggCUCuGgcagCGgUUGUCCUu -3'
miRNA:   3'- -GC-GGACGCACCa-------GAG-Ca---GC-AACAGGA- -5'
14614 5' -56.4 NC_003521.1 + 169337 0.66 0.958802
Target:  5'- gGCCgGCGUGGUUUCGg-GUUGcgCUUc -3'
miRNA:   3'- gCGGaCGCACCAGAGCagCAACa-GGA- -5'
14614 5' -56.4 NC_003521.1 + 163263 0.66 0.954433
Target:  5'- aCGCCuUGaCGccGGUCUCGUCGgaagaaaccacGUCCa -3'
miRNA:   3'- -GCGG-AC-GCa-CCAGAGCAGCaa---------CAGGa -5'
14614 5' -56.4 NC_003521.1 + 143318 0.66 0.951352
Target:  5'- aGCuCUGCGaGGUCUCGcucUCGUaccUCCUg -3'
miRNA:   3'- gCG-GACGCaCCAGAGC---AGCAac-AGGA- -5'
14614 5' -56.4 NC_003521.1 + 103280 0.67 0.94305
Target:  5'- gGCCgGCGccGUCUCGUCGUaGgCCa -3'
miRNA:   3'- gCGGaCGCacCAGAGCAGCAaCaGGa -5'
14614 5' -56.4 NC_003521.1 + 127883 0.67 0.938574
Target:  5'- gCGCg-GCGUGcacagcggcaccGUCUCGcUGUUGUCCUg -3'
miRNA:   3'- -GCGgaCGCAC------------CAGAGCaGCAACAGGA- -5'
14614 5' -56.4 NC_003521.1 + 134080 0.67 0.938574
Target:  5'- aGUagUUGUaGUGGUCgUCGUCGUUGUgCUg -3'
miRNA:   3'- gCG--GACG-CACCAG-AGCAGCAACAgGA- -5'
14614 5' -56.4 NC_003521.1 + 59046 0.67 0.933878
Target:  5'- gGCCUugaGCGccGUCUCcagcUCGUUGUCCUc -3'
miRNA:   3'- gCGGA---CGCacCAGAGc---AGCAACAGGA- -5'
14614 5' -56.4 NC_003521.1 + 123493 0.67 0.918463
Target:  5'- uCGCCgGCGgGGUgUCGUCGUcG-CCg -3'
miRNA:   3'- -GCGGaCGCaCCAgAGCAGCAaCaGGa -5'
14614 5' -56.4 NC_003521.1 + 69983 0.68 0.894836
Target:  5'- aGCCgacGCGc-GUCUCGUCGUgcaGUCCc -3'
miRNA:   3'- gCGGa--CGCacCAGAGCAGCAa--CAGGa -5'
14614 5' -56.4 NC_003521.1 + 46448 0.68 0.888391
Target:  5'- gGgCUGCGggggcUGGUCggccUCGUCGUcGUCCUc -3'
miRNA:   3'- gCgGACGC-----ACCAG----AGCAGCAaCAGGA- -5'
14614 5' -56.4 NC_003521.1 + 51718 0.69 0.87488
Target:  5'- ----aGCGUGGUCUCcUCGUcGUCCg -3'
miRNA:   3'- gcggaCGCACCAGAGcAGCAaCAGGa -5'
14614 5' -56.4 NC_003521.1 + 144310 0.69 0.853872
Target:  5'- aCGCgCUGCGguucguggacaacaaGGUCUCGUCGUg--CCg -3'
miRNA:   3'- -GCG-GACGCa--------------CCAGAGCAGCAacaGGa -5'
14614 5' -56.4 NC_003521.1 + 28325 0.75 0.528479
Target:  5'- gGCCUaCGUGGUCUCGUCGgccaUGUgCg -3'
miRNA:   3'- gCGGAcGCACCAGAGCAGCa---ACAgGa -5'
14614 5' -56.4 NC_003521.1 + 222059 1.07 0.006064
Target:  5'- cCGCCUGCGUGGUCUCGUCGUUGUCCUc -3'
miRNA:   3'- -GCGGACGCACCAGAGCAGCAACAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.