Results 101 - 107 of 107 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 14615 | 3' | -60.3 | NC_003521.1 | + | 100711 | 0.73 | 0.476299 |
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Target: 5'- gCCGCgGCCGCUGauGGaggagGCGggGGGUUCAu -3' miRNA: 3'- -GGUG-CGGCGAC--CCg----UGCuuCCCAGGU- -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 222746 | 0.74 | 0.407599 |
|
Target: 5'- gCGCGCCGuCUGGGCuACGGccacggcgucgguGGGGUCg- -3' miRNA: 3'- gGUGCGGC-GACCCG-UGCU-------------UCCCAGgu -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 101953 | 0.75 | 0.361634 |
|
Target: 5'- uCCAgGCUGUucucgGGGUGCGAgauGGGGUCCAg -3' miRNA: 3'- -GGUgCGGCGa----CCCGUGCU---UCCCAGGU- -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 153102 | 0.75 | 0.338971 |
|
Target: 5'- aCCACGCCGCcGGGCGCGcgcgacggcagcAGGcggcuuuGGUCCAc -3' miRNA: 3'- -GGUGCGGCGaCCCGUGC------------UUC-------CCAGGU- -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 98526 | 0.78 | 0.244654 |
|
Target: 5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3' miRNA: 3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 174679 | 0.84 | 0.10644 |
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Target: 5'- gCGCGCUGC-GGGUGCGAGGGGUCCc -3' miRNA: 3'- gGUGCGGCGaCCCGUGCUUCCCAGGu -5' |
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| 14615 | 3' | -60.3 | NC_003521.1 | + | 222511 | 1.1 | 0.001867 |
|
Target: 5'- aCCACGCCGCUGGGCACGAAGGGUCCAu -3' miRNA: 3'- -GGUGCGGCGACCCGUGCUUCCCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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