miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 23732 0.68 0.748138
Target:  5'- cCCAUGUCGCUGGGCGgcCGAcuguuccuGGG-CUAc -3'
miRNA:   3'- -GGUGCGGCGACCCGU--GCUu-------CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 204099 0.68 0.739029
Target:  5'- aCCGCGuaGUUGggguaggcgugcGGCACGAAGGGcaCCAu -3'
miRNA:   3'- -GGUGCggCGAC------------CCGUGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 192940 0.68 0.739029
Target:  5'- gCCGCGCC-CUGGGaCACu--GGG-CCAu -3'
miRNA:   3'- -GGUGCGGcGACCC-GUGcuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 129548 0.68 0.72984
Target:  5'- gCgGCGgCGCU-GGCACGgcGGGcCCGa -3'
miRNA:   3'- -GgUGCgGCGAcCCGUGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 55972 0.68 0.72984
Target:  5'- aCCACGCCGaugugcagGGGC-CGcAGccGGUCCAc -3'
miRNA:   3'- -GGUGCGGCga------CCCGuGCuUC--CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224429 0.68 0.72984
Target:  5'- -gGCGCUGCgUGGuGgGCGAGcGGUCCAg -3'
miRNA:   3'- ggUGCGGCG-ACC-CgUGCUUcCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 196777 0.68 0.748138
Target:  5'- gCGCGaCCGC-GGGCGCGGuaaacGGGaCCGu -3'
miRNA:   3'- gGUGC-GGCGaCCCGUGCUu----CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 113312 0.68 0.720575
Target:  5'- uUCACGCUcucggaccuGCUGGGCcaagacgcCGggGGGcuUCCAg -3'
miRNA:   3'- -GGUGCGG---------CGACCCGu-------GCuuCCC--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 76225 0.68 0.720575
Target:  5'- gCACGCC-CUGGGCGCGcac-GUCCu -3'
miRNA:   3'- gGUGCGGcGACCCGUGCuuccCAGGu -5'
14615 3' -60.3 NC_003521.1 + 115324 0.68 0.733525
Target:  5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3'
miRNA:   3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 151105 0.68 0.757156
Target:  5'- gUCGgGCCGCUGGGggaugGCGggGGGa--- -3'
miRNA:   3'- -GGUgCGGCGACCCg----UGCuuCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 14724 0.68 0.711244
Target:  5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3'
miRNA:   3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 12203 0.67 0.800639
Target:  5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3'
miRNA:   3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 150506 0.67 0.774017
Target:  5'- aCgGCGCCgGCgGGGCccugcuaggaGCGGgagccguGGGGUCCGg -3'
miRNA:   3'- -GgUGCGG-CGaCCCG----------UGCU-------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 132431 0.67 0.774894
Target:  5'- gCgACGCCGCUGGuaGCGGugguGGGcuguucggcgcgUCCGg -3'
miRNA:   3'- -GgUGCGGCGACCcgUGCUu---CCC------------AGGU- -5'
14615 3' -60.3 NC_003521.1 + 45293 0.67 0.774894
Target:  5'- -gGCGCCGCUGGGCcAgGAGccGGaGcCCGa -3'
miRNA:   3'- ggUGCGGCGACCCG-UgCUU--CC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 197165 0.67 0.807309
Target:  5'- uCCGCGCUgggccugGCaGGGCugGAGGcgguggcGGUCCc -3'
miRNA:   3'- -GGUGCGG-------CGaCCCGugCUUC-------CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 225784 0.67 0.783598
Target:  5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3'
miRNA:   3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5'
14615 3' -60.3 NC_003521.1 + 218469 0.67 0.800639
Target:  5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3'
miRNA:   3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5'
14615 3' -60.3 NC_003521.1 + 118920 0.67 0.792182
Target:  5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3'
miRNA:   3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.