miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 14227 0.67 0.800639
Target:  5'- -gACGCCGCUGGGCuACGccGuGaUCCu -3'
miRNA:   3'- ggUGCGGCGACCCG-UGCuuC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 132431 0.67 0.774894
Target:  5'- gCgACGCCGCUGGuaGCGGugguGGGcuguucggcgcgUCCGg -3'
miRNA:   3'- -GgUGCGGCGACCcgUGCUu---CCC------------AGGU- -5'
14615 3' -60.3 NC_003521.1 + 45293 0.67 0.774894
Target:  5'- -gGCGCCGCUGGGCcAgGAGccGGaGcCCGa -3'
miRNA:   3'- ggUGCGGCGACCCG-UgCUU--CC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 225784 0.67 0.783598
Target:  5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3'
miRNA:   3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5'
14615 3' -60.3 NC_003521.1 + 7954 0.67 0.808962
Target:  5'- uCCAgauCGCCGC-GGuGuCGCGGccgggAGGGUCCGc -3'
miRNA:   3'- -GGU---GCGGCGaCC-C-GUGCU-----UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 1785 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 223696 0.67 0.80648
Target:  5'- gCGCGCCGgcaggaucgacgacCUcgccGGGUACGAcggcGGGUCCGg -3'
miRNA:   3'- gGUGCGGC--------------GA----CCCGUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224135 0.67 0.800639
Target:  5'- uCCAgGCCG-UGGGC-CGAGucGGG-CCAg -3'
miRNA:   3'- -GGUgCGGCgACCCGuGCUU--CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 202012 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 92019 0.67 0.808962
Target:  5'- -gGCGCgGCgGcGGCgGCGguGGGUCCGg -3'
miRNA:   3'- ggUGCGgCGaC-CCG-UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 12203 0.67 0.800639
Target:  5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3'
miRNA:   3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 218469 0.67 0.800639
Target:  5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3'
miRNA:   3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5'
14615 3' -60.3 NC_003521.1 + 118920 0.67 0.792182
Target:  5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3'
miRNA:   3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 112789 0.66 0.862909
Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3'
miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 141479 0.66 0.862909
Target:  5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3'
miRNA:   3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 88184 0.66 0.862909
Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3'
miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 184845 0.66 0.851301
Target:  5'- cUCGCGCCGCUGcgacugccgaccccaGGCACaGcAGcGUCCAc -3'
miRNA:   3'- -GGUGCGGCGAC---------------CCGUG-CuUCcCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 86518 0.66 0.848329
Target:  5'- gCCAUGUCGCcgaUGGGCACGuucuuGGG-Ca- -3'
miRNA:   3'- -GGUGCGGCG---ACCCGUGCuu---CCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 82632 0.66 0.855708
Target:  5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3'
miRNA:   3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 206623 0.66 0.862909
Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3'
miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.