miRNA display CGI

Results 101 - 107 of 107 are showing below:
Show page: 1 2 3 4 5 6

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
14615	3'	-60.3	NC_003521.1	+	24279	0.66	0.855708
	Target:  5'- cCCugGCCGCUGcacugugcuGGCucgaGCGAuucGaGGUCCu -3' miRNA:   3'- -GGugCGGCGAC---------CCG----UGCUu--C-CCAGGu -5'
14615	3'	-60.3	NC_003521.1	+	82632	0.66	0.855708
	Target:  5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3' miRNA:   3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5'
14615	3'	-60.3	NC_003521.1	+	141479	0.66	0.862909
	Target:  5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3' miRNA:   3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5'
14615	3'	-60.3	NC_003521.1	+	112789	0.66	0.862909
	Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3' miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615	3'	-60.3	NC_003521.1	+	155653	0.66	0.862909
	Target:  5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3' miRNA:   3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5'
14615	3'	-60.3	NC_003521.1	+	88184	0.66	0.862909
	Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3' miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615	3'	-60.3	NC_003521.1	+	206623	0.66	0.862909
	Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3' miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home