miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 151105 0.68 0.757156
Target:  5'- gUCGgGCCGCUGGGggaugGCGggGGGa--- -3'
miRNA:   3'- -GGUgCGGCGACCCg----UGCuuCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 153102 0.75 0.338971
Target:  5'- aCCACGCCGCcGGGCGCGcgcgacggcagcAGGcggcuuuGGUCCAc -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGC------------UUC-------CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 155283 0.66 0.817144
Target:  5'- gCC-CGUCGCUGGGCaACGccauGGGcUUCGg -3'
miRNA:   3'- -GGuGCGGCGACCCG-UGCuu--CCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 155653 0.66 0.862909
Target:  5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3'
miRNA:   3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5'
14615 3' -60.3 NC_003521.1 + 156883 0.69 0.701853
Target:  5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3'
miRNA:   3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5'
14615 3' -60.3 NC_003521.1 + 159744 0.67 0.800639
Target:  5'- cCCAuCGCCGCgcgcuucaUGGGCgACGugcuGGGGUUg- -3'
miRNA:   3'- -GGU-GCGGCG--------ACCCG-UGCu---UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 163209 0.66 0.839246
Target:  5'- cCgGCGCCGUcacGGGCGCGcccggugacguGGGUUCGg -3'
miRNA:   3'- -GgUGCGGCGa--CCCGUGCuu---------CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 167615 0.67 0.766077
Target:  5'- -gGCGCCGCa-GGCGCucGGGGUCg- -3'
miRNA:   3'- ggUGCGGCGacCCGUGcuUCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 169777 0.68 0.748138
Target:  5'- -gGCGCCGCgcuuUGGGCGCucGAGGGaCUAu -3'
miRNA:   3'- ggUGCGGCG----ACCCGUGc-UUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 170196 0.68 0.757156
Target:  5'- --gUGCCGgUGgagguaguGGCACGAGGGGUCg- -3'
miRNA:   3'- gguGCGGCgAC--------CCGUGCUUCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 173038 0.66 0.848329
Target:  5'- gCuCGCCGgUGGGCA-GcuGGGUCUg -3'
miRNA:   3'- gGuGCGGCgACCCGUgCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 174679 0.84 0.10644
Target:  5'- gCGCGCUGC-GGGUGCGAGGGGUCCc -3'
miRNA:   3'- gGUGCGGCGaCCCGUGCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 176540 0.71 0.587182
Target:  5'- gCCGCGCUGC-GGG---GAGGGGUCCu -3'
miRNA:   3'- -GGUGCGGCGaCCCgugCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 179608 0.66 0.848329
Target:  5'- gCCGCuGCUGCUGcGCgugaugucGCGGAucacGGGUCCAc -3'
miRNA:   3'- -GGUG-CGGCGACcCG--------UGCUU----CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 183333 0.66 0.833058
Target:  5'- gCGCGCCGUcaUGGGCAaGAAGuG-CCAc -3'
miRNA:   3'- gGUGCGGCG--ACCCGUgCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 184845 0.66 0.851301
Target:  5'- cUCGCGCCGCUGcgacugccgaccccaGGCACaGcAGcGUCCAc -3'
miRNA:   3'- -GGUGCGGCGAC---------------CCGUG-CuUCcCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 185716 0.66 0.833058
Target:  5'- uCCGCGUcuCGCcGGGUGCGGAGGuGaucgCCGa -3'
miRNA:   3'- -GGUGCG--GCGaCCCGUGCUUCC-Ca---GGU- -5'
14615 3' -60.3 NC_003521.1 + 187047 0.67 0.766077
Target:  5'- --gUGCgGCUaacGGGCGgGAAGGGUgCCAg -3'
miRNA:   3'- gguGCGgCGA---CCCGUgCUUCCCA-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.