Results 101 - 107 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 224273 | 0.69 | 0.663849 |
Target: 5'- gCGCGCC-CUcacccaGGuGCACGcAGGGUCCGu -3' miRNA: 3'- gGUGCGGcGA------CC-CGUGCuUCCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 224429 | 0.68 | 0.72984 |
Target: 5'- -gGCGCUGCgUGGuGgGCGAGcGGUCCAg -3' miRNA: 3'- ggUGCGGCG-ACC-CgUGCUUcCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 224610 | 0.68 | 0.711244 |
Target: 5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3' miRNA: 3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 225784 | 0.67 | 0.783598 |
Target: 5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3' miRNA: 3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 225968 | 0.66 | 0.825179 |
Target: 5'- gUCACGCUGUUGGccacgcgccGCACGuagugguuGGGGUCg- -3' miRNA: 3'- -GGUGCGGCGACC---------CGUGCu-------UCCCAGgu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 226843 | 0.7 | 0.635083 |
Target: 5'- cCCGcCGCCGCgccGGGCAgGcccaucAGGGcGUCCAg -3' miRNA: 3'- -GGU-GCGGCGa--CCCGUgC------UUCC-CAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 238863 | 0.71 | 0.568181 |
Target: 5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3' miRNA: 3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home