Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 13884 | 0.67 | 0.7998 |
Target: 5'- gCCAuggauuuCGCCGggGGGCccggcGCGGAGGGggCCGc -3' miRNA: 3'- -GGU-------GCGGCgaCCCG-----UGCUUCCCa-GGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 13472 | 0.66 | 0.816333 |
Target: 5'- -aGCGCCGUcgacggucUGGGCgACGGggaacguGGGGUCUu -3' miRNA: 3'- ggUGCGGCG--------ACCCG-UGCU-------UCCCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 13188 | 0.66 | 0.840777 |
Target: 5'- aCCAggcgUGCCGCUcGGGCcgccguguUGGAGGG-CCGa -3' miRNA: 3'- -GGU----GCGGCGA-CCCGu-------GCUUCCCaGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 12203 | 0.67 | 0.800639 |
Target: 5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3' miRNA: 3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 11756 | 0.7 | 0.641804 |
Target: 5'- uCCACGCCGcCUGGGUGacugccuucguccuCGuGGGGUUCc -3' miRNA: 3'- -GGUGCGGC-GACCCGU--------------GCuUCCCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 7954 | 0.67 | 0.808962 |
Target: 5'- uCCAgauCGCCGC-GGuGuCGCGGccgggAGGGUCCGc -3' miRNA: 3'- -GGU---GCGGCGaCC-C-GUGCU-----UCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 1785 | 0.67 | 0.808962 |
Target: 5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3' miRNA: 3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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