Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 76225 | 0.68 | 0.720575 |
Target: 5'- gCACGCC-CUGGGCGCGcac-GUCCu -3' miRNA: 3'- gGUGCGGcGACCCGUGCuuccCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 224610 | 0.68 | 0.711244 |
Target: 5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3' miRNA: 3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 125301 | 0.69 | 0.692411 |
Target: 5'- gCCGCGUCGUUcGcGGaCGCGGcgguGGGUCCGg -3' miRNA: 3'- -GGUGCGGCGA-C-CC-GUGCUu---CCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 139920 | 0.69 | 0.672448 |
Target: 5'- gCGCGCUGCUccucgGGGCACGGccggaAGGccagcucGUCCAg -3' miRNA: 3'- gGUGCGGCGA-----CCCGUGCU-----UCC-------CAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 224273 | 0.69 | 0.663849 |
Target: 5'- gCGCGCC-CUcacccaGGuGCACGcAGGGUCCGu -3' miRNA: 3'- gGUGCGGcGA------CC-CGUGCuUCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 135618 | 0.7 | 0.632203 |
Target: 5'- gCCGCGCaGCUcgcGGGCggaucccacgaucgGCGggGGGcCCAg -3' miRNA: 3'- -GGUGCGgCGA---CCCG--------------UGCuuCCCaGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 211332 | 0.69 | 0.654274 |
Target: 5'- -gGCGgucCCGC-GGGCGCGAgugguuGGGGUCCc -3' miRNA: 3'- ggUGC---GGCGaCCCGUGCU------UCCCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 48599 | 0.69 | 0.663849 |
Target: 5'- cCCGCGgCGCcGGGuCGCaaGAaacAGGGUCCGc -3' miRNA: 3'- -GGUGCgGCGaCCC-GUG--CU---UCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 127668 | 0.69 | 0.673402 |
Target: 5'- uCUugGCCGCga-GCagGCGgcGGGUCCAg -3' miRNA: 3'- -GGugCGGCGaccCG--UGCuuCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 87415 | 0.69 | 0.681974 |
Target: 5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3' miRNA: 3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 172165 | 0.69 | 0.682925 |
Target: 5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3' miRNA: 3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 196656 | 0.7 | 0.606298 |
Target: 5'- gCACGuCCaGCUGGGUGCGca-GGUCCAc -3' miRNA: 3'- gGUGC-GG-CGACCCGUGCuucCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 176540 | 0.71 | 0.587182 |
Target: 5'- gCCGCGCUGC-GGG---GAGGGGUCCu -3' miRNA: 3'- -GGUGCGGCGaCCCgugCUUCCCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 204579 | 0.71 | 0.577664 |
Target: 5'- aCCACGUCGCgcccGGCAguCGGuaguccugcucGGGGUCCAu -3' miRNA: 3'- -GGUGCGGCGac--CCGU--GCU-----------UCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 53348 | 0.71 | 0.568181 |
Target: 5'- aCCACGCCgGC-GcGGCgGCGGAGGGgCCGa -3' miRNA: 3'- -GGUGCGG-CGaC-CCG-UGCUUCCCaGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 38636 | 0.71 | 0.568181 |
Target: 5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3' miRNA: 3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 15667 | 0.72 | 0.485181 |
Target: 5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3' miRNA: 3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 123057 | 0.72 | 0.485181 |
Target: 5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3' miRNA: 3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 98526 | 0.78 | 0.244654 |
Target: 5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3' miRNA: 3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 206623 | 0.66 | 0.862909 |
Target: 5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3' miRNA: 3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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