miRNA display CGI


Results 81 - 100 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 204579 0.71 0.577664
Target:  5'- aCCACGUCGCgcccGGCAguCGGuaguccugcucGGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGac--CCGU--GCU-----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 53348 0.71 0.568181
Target:  5'- aCCACGCCgGC-GcGGCgGCGGAGGGgCCGa -3'
miRNA:   3'- -GGUGCGG-CGaC-CCG-UGCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 38636 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 15667 0.72 0.485181
Target:  5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3'
miRNA:   3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 123057 0.72 0.485181
Target:  5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3'
miRNA:   3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 98526 0.78 0.244654
Target:  5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3'
miRNA:   3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 87415 0.69 0.681974
Target:  5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3'
miRNA:   3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 70357 0.68 0.748138
Target:  5'- gCCGCGCUagucgGCgacaugacugGGGCGCGAGGGGa--- -3'
miRNA:   3'- -GGUGCGG-----CGa---------CCCGUGCUUCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 23732 0.68 0.748138
Target:  5'- cCCAUGUCGCUGGGCGgcCGAcuguuccuGGG-CUAc -3'
miRNA:   3'- -GGUGCGGCGACCCGU--GCUu-------CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 204099 0.68 0.739029
Target:  5'- aCCGCGuaGUUGggguaggcgugcGGCACGAAGGGcaCCAu -3'
miRNA:   3'- -GGUGCggCGAC------------CCGUGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 192940 0.68 0.739029
Target:  5'- gCCGCGCC-CUGGGaCACu--GGG-CCAu -3'
miRNA:   3'- -GGUGCGGcGACCC-GUGcuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 115324 0.68 0.733525
Target:  5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3'
miRNA:   3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 14724 0.68 0.711244
Target:  5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3'
miRNA:   3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 156883 0.69 0.701853
Target:  5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3'
miRNA:   3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 200882 0.69 0.692411
Target:  5'- aUACGCUGCUGGaGCugcugGCGGAGGacaUCCAc -3'
miRNA:   3'- gGUGCGGCGACC-CG-----UGCUUCCc--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 212241 0.69 0.682925
Target:  5'- gUCGCGCuCGCcggGGGaCACGuuccugaacacGGGGUCCAc -3'
miRNA:   3'- -GGUGCG-GCGa--CCC-GUGCu----------UCCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.