Results 101 - 107 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 115324 | 0.68 | 0.733525 |
Target: 5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3' miRNA: 3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 14724 | 0.68 | 0.711244 |
Target: 5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3' miRNA: 3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 156883 | 0.69 | 0.701853 |
Target: 5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3' miRNA: 3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 155551 | 0.69 | 0.701853 |
Target: 5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3' miRNA: 3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 148874 | 0.69 | 0.701853 |
Target: 5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3' miRNA: 3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 146358 | 0.69 | 0.701853 |
Target: 5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3' miRNA: 3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5' |
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14615 | 3' | -60.3 | NC_003521.1 | + | 174679 | 0.84 | 0.10644 |
Target: 5'- gCGCGCUGC-GGGUGCGAGGGGUCCc -3' miRNA: 3'- gGUGCGGCGaCCCGUGCUUCCCAGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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