miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 183333 0.66 0.833058
Target:  5'- gCGCGCCGUcaUGGGCAaGAAGuG-CCAc -3'
miRNA:   3'- gGUGCGGCG--ACCCGUgCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 13884 0.67 0.7998
Target:  5'- gCCAuggauuuCGCCGggGGGCccggcGCGGAGGGggCCGc -3'
miRNA:   3'- -GGU-------GCGGCgaCCCG-----UGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 34653 0.66 0.825179
Target:  5'- cCCugGCCGCccugcuccUGGGCuucuCGGAGGccuuUCCc -3'
miRNA:   3'- -GGugCGGCG--------ACCCGu---GCUUCCc---AGGu -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 95261 0.66 0.855708
Target:  5'- gCCGCaGCaCGUUcuGCACGAAgGGGUCCu -3'
miRNA:   3'- -GGUG-CG-GCGAccCGUGCUU-CCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 156883 0.69 0.701853
Target:  5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3'
miRNA:   3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5'
14615 3' -60.3 NC_003521.1 + 17417 0.66 0.855708
Target:  5'- -gACGCCGCgccgGGGCgccacacggcccGCGucGGGgcgCCGc -3'
miRNA:   3'- ggUGCGGCGa---CCCG------------UGCuuCCCa--GGU- -5'
14615 3' -60.3 NC_003521.1 + 187639 0.66 0.848329
Target:  5'- gCGCGCCGCUGG-CcaucuucaucgGCGAGGGcGgCCGc -3'
miRNA:   3'- gGUGCGGCGACCcG-----------UGCUUCC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 58895 0.66 0.848329
Target:  5'- aCCGCaucguaGCC-CUGGGCGCGuuGGGagCCc -3'
miRNA:   3'- -GGUG------CGGcGACCCGUGCuuCCCa-GGu -5'
14615 3' -60.3 NC_003521.1 + 179608 0.66 0.848329
Target:  5'- gCCGCuGCUGCUGcGCgugaugucGCGGAucacGGGUCCAc -3'
miRNA:   3'- -GGUG-CGGCGACcCG--------UGCUU----CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 13188 0.66 0.840777
Target:  5'- aCCAggcgUGCCGCUcGGGCcgccguguUGGAGGG-CCGa -3'
miRNA:   3'- -GGU----GCGGCGA-CCCGu-------GCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 163209 0.66 0.839246
Target:  5'- cCgGCGCCGUcacGGGCGCGcccggugacguGGGUUCGg -3'
miRNA:   3'- -GgUGCGGCGa--CCCGUGCuu---------CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 117487 0.66 0.825179
Target:  5'- gCCGCGgCGCUGGGgC-CGucGGuGUUCGg -3'
miRNA:   3'- -GGUGCgGCGACCC-GuGCuuCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 141211 0.66 0.825179
Target:  5'- gCUGCGCCGCcGGGCGCugcaGGUCa- -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGcuucCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 1785 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 159744 0.67 0.800639
Target:  5'- cCCAuCGCCGCgcgcuucaUGGGCgACGugcuGGGGUUg- -3'
miRNA:   3'- -GGU-GCGGCG--------ACCCG-UGCu---UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 65022 0.67 0.766077
Target:  5'- aCCAUGCCGCccaGGGC-CGAggcuguGGGGUaugCCu -3'
miRNA:   3'- -GGUGCGGCGa--CCCGuGCU------UCCCA---GGu -5'
14615 3' -60.3 NC_003521.1 + 169777 0.68 0.748138
Target:  5'- -gGCGCCGCgcuuUGGGCGCucGAGGGaCUAu -3'
miRNA:   3'- ggUGCGGCG----ACCCGUGc-UUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 192940 0.68 0.739029
Target:  5'- gCCGCGCC-CUGGGaCACu--GGG-CCAu -3'
miRNA:   3'- -GGUGCGGcGACCC-GUGcuuCCCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.