Results 81 - 100 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 225968 | 0.66 | 0.825179 |
Target: 5'- gUCACGCUGUUGGccacgcgccGCACGuagugguuGGGGUCg- -3' miRNA: 3'- -GGUGCGGCGACC---------CGUGCu-------UCCCAGgu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 83702 | 0.66 | 0.825179 |
Target: 5'- aCGCGCgaGC-GGGCGucCaAGGGGUCCAg -3' miRNA: 3'- gGUGCGg-CGaCCCGU--GcUUCCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 86518 | 0.66 | 0.848329 |
Target: 5'- gCCAUGUCGCcgaUGGGCACGuucuuGGG-Ca- -3' miRNA: 3'- -GGUGCGGCG---ACCCGUGCuu---CCCaGgu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 209549 | 0.66 | 0.840777 |
Target: 5'- -uGCGCCcgGCgGGGUggcgGCGAcgguggcgGGGGUCCGg -3' miRNA: 3'- ggUGCGG--CGaCCCG----UGCU--------UCCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 184845 | 0.66 | 0.851301 |
Target: 5'- cUCGCGCCGCUGcgacugccgaccccaGGCACaGcAGcGUCCAc -3' miRNA: 3'- -GGUGCGGCGAC---------------CCGUG-CuUCcCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 82632 | 0.66 | 0.855708 |
Target: 5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3' miRNA: 3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 88184 | 0.66 | 0.862909 |
Target: 5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3' miRNA: 3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 141479 | 0.66 | 0.862909 |
Target: 5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3' miRNA: 3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 155653 | 0.66 | 0.862909 |
Target: 5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3' miRNA: 3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 85598 | 0.66 | 0.824382 |
Target: 5'- aCCACGgacuccaCCGa-GGGCGCGAagAGGG-CCGa -3' miRNA: 3'- -GGUGC-------GGCgaCCCGUGCU--UCCCaGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 89999 | 0.66 | 0.817144 |
Target: 5'- -gGCGCUGCgGGGaCACGuuguuucGGUCCAg -3' miRNA: 3'- ggUGCGGCGaCCC-GUGCuuc----CCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 150506 | 0.67 | 0.774017 |
Target: 5'- aCgGCGCCgGCgGGGCccugcuaggaGCGGgagccguGGGGUCCGg -3' miRNA: 3'- -GgUGCGG-CGaCCCG----------UGCU-------UCCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 132431 | 0.67 | 0.774894 |
Target: 5'- gCgACGCCGCUGGuaGCGGugguGGGcuguucggcgcgUCCGg -3' miRNA: 3'- -GgUGCGGCGACCcgUGCUu---CCC------------AGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 45293 | 0.67 | 0.774894 |
Target: 5'- -gGCGCCGCUGGGCcAgGAGccGGaGcCCGa -3' miRNA: 3'- ggUGCGGCGACCCG-UgCUU--CC-CaGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 225784 | 0.67 | 0.783598 |
Target: 5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3' miRNA: 3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 118920 | 0.67 | 0.792182 |
Target: 5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3' miRNA: 3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 218469 | 0.67 | 0.800639 |
Target: 5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3' miRNA: 3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 12203 | 0.67 | 0.800639 |
Target: 5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3' miRNA: 3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 197165 | 0.67 | 0.807309 |
Target: 5'- uCCGCGCUgggccugGCaGGGCugGAGGcgguggcGGUCCc -3' miRNA: 3'- -GGUGCGG-------CGaCCCGugCUUC-------CCAGGu -5' |
|||||||
14615 | 3' | -60.3 | NC_003521.1 | + | 202012 | 0.67 | 0.808962 |
Target: 5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3' miRNA: 3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home