miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 224135 0.67 0.800639
Target:  5'- uCCAgGCCG-UGGGC-CGAGucGGG-CCAg -3'
miRNA:   3'- -GGUgCGGCgACCCGuGCUU--CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 12203 0.67 0.800639
Target:  5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3'
miRNA:   3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 14227 0.67 0.800639
Target:  5'- -gACGCCGCUGGGCuACGccGuGaUCCu -3'
miRNA:   3'- ggUGCGGCGACCCG-UGCuuC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 159744 0.67 0.800639
Target:  5'- cCCAuCGCCGCgcgcuucaUGGGCgACGugcuGGGGUUg- -3'
miRNA:   3'- -GGU-GCGGCG--------ACCCG-UGCu---UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 218469 0.67 0.800639
Target:  5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3'
miRNA:   3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5'
14615 3' -60.3 NC_003521.1 + 13884 0.67 0.7998
Target:  5'- gCCAuggauuuCGCCGggGGGCccggcGCGGAGGGggCCGc -3'
miRNA:   3'- -GGU-------GCGGCgaCCCG-----UGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 118920 0.67 0.792182
Target:  5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3'
miRNA:   3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 91250 0.67 0.792182
Target:  5'- aCCACGUagaUGGGCACGGGcGGGaaaCCGg -3'
miRNA:   3'- -GGUGCGgcgACCCGUGCUU-CCCa--GGU- -5'
14615 3' -60.3 NC_003521.1 + 225784 0.67 0.783598
Target:  5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3'
miRNA:   3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5'
14615 3' -60.3 NC_003521.1 + 132431 0.67 0.774894
Target:  5'- gCgACGCCGCUGGuaGCGGugguGGGcuguucggcgcgUCCGg -3'
miRNA:   3'- -GgUGCGGCGACCcgUGCUu---CCC------------AGGU- -5'
14615 3' -60.3 NC_003521.1 + 45293 0.67 0.774894
Target:  5'- -gGCGCCGCUGGGCcAgGAGccGGaGcCCGa -3'
miRNA:   3'- ggUGCGGCGACCCG-UgCUU--CC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 150506 0.67 0.774017
Target:  5'- aCgGCGCCgGCgGGGCccugcuaggaGCGGgagccguGGGGUCCGg -3'
miRNA:   3'- -GgUGCGG-CGaCCCG----------UGCU-------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 65022 0.67 0.766077
Target:  5'- aCCAUGCCGCccaGGGC-CGAggcuguGGGGUaugCCu -3'
miRNA:   3'- -GGUGCGGCGa--CCCGuGCU------UCCCA---GGu -5'
14615 3' -60.3 NC_003521.1 + 187047 0.67 0.766077
Target:  5'- --gUGCgGCUaacGGGCGgGAAGGGUgCCAg -3'
miRNA:   3'- gguGCGgCGA---CCCGUgCUUCCCA-GGU- -5'
14615 3' -60.3 NC_003521.1 + 167615 0.67 0.766077
Target:  5'- -gGCGCCGCa-GGCGCucGGGGUCg- -3'
miRNA:   3'- ggUGCGGCGacCCGUGcuUCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 170196 0.68 0.757156
Target:  5'- --gUGCCGgUGgagguaguGGCACGAGGGGUCg- -3'
miRNA:   3'- gguGCGGCgAC--------CCGUGCUUCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 151105 0.68 0.757156
Target:  5'- gUCGgGCCGCUGGGggaugGCGggGGGa--- -3'
miRNA:   3'- -GGUgCGGCGACCCg----UGCuuCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 169777 0.68 0.748138
Target:  5'- -gGCGCCGCgcuuUGGGCGCucGAGGGaCUAu -3'
miRNA:   3'- ggUGCGGCG----ACCCGUGc-UUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 70357 0.68 0.748138
Target:  5'- gCCGCGCUagucgGCgacaugacugGGGCGCGAGGGGa--- -3'
miRNA:   3'- -GGUGCGG-----CGa---------CCCGUGCUUCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 23732 0.68 0.748138
Target:  5'- cCCAUGUCGCUGGGCGgcCGAcuguuccuGGG-CUAc -3'
miRNA:   3'- -GGUGCGGCGACCCGU--GCUu-------CCCaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.