Results 61 - 80 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 139523 | 0.68 | 0.919705 |
Target: 5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3' miRNA: 3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 224724 | 0.68 | 0.919705 |
Target: 5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3' miRNA: 3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166359 | 0.68 | 0.924629 |
Target: 5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49374 | 0.68 | 0.925164 |
Target: 5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3' miRNA: 3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 238042 | 0.68 | 0.930389 |
Target: 5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3' miRNA: 3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 113760 | 0.68 | 0.93538 |
Target: 5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3' miRNA: 3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 130956 | 0.68 | 0.93538 |
Target: 5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3' miRNA: 3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153084 | 0.69 | 0.888938 |
Target: 5'- --gGGCCCGggcCGggGCCCACCACGc-- -3' miRNA: 3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 200949 | 0.69 | 0.888938 |
Target: 5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3' miRNA: 3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 75917 | 0.69 | 0.895547 |
Target: 5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3' miRNA: 3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49872 | 0.69 | 0.910485 |
Target: 5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3' miRNA: 3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 163411 | 0.69 | 0.908087 |
Target: 5'- cGUGGcCCCGUCGucggcugccgcUGCCUACCAgGgUGCc -3' miRNA: 3'- uCAUC-GGGUAGU-----------ACGGGUGGUgC-AUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 63406 | 0.69 | 0.908087 |
Target: 5'- gGGUAGUCgAguuuaCGgggaagcgGCCCGCCGCGUAUa -3' miRNA: 3'- -UCAUCGGgUa----GUa-------CGGGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 78320 | 0.69 | 0.901931 |
Target: 5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3' miRNA: 3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 722 | 0.69 | 0.888938 |
Target: 5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3' miRNA: 3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 211383 | 0.69 | 0.901931 |
Target: 5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3' miRNA: 3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 120720 | 0.69 | 0.908087 |
Target: 5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3' miRNA: 3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 203366 | 0.69 | 0.901931 |
Target: 5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3' miRNA: 3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 226604 | 0.7 | 0.852658 |
Target: 5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3' miRNA: 3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 151804 | 0.7 | 0.844792 |
Target: 5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3' miRNA: 3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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