miRNA display CGI


Results 81 - 100 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 34193 0.7 0.836736
Target:  5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 111598 0.7 0.836736
Target:  5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3'
miRNA:   3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 123308 0.7 0.860328
Target:  5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3'
miRNA:   3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 136694 0.7 0.860328
Target:  5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3'
miRNA:   3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 138805 0.7 0.860328
Target:  5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 128360 0.7 0.875058
Target:  5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3'
miRNA:   3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5'
14615 5' -54.7 NC_003521.1 + 90822 0.7 0.852658
Target:  5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3'
miRNA:   3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 151804 0.7 0.844792
Target:  5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3'
miRNA:   3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5'
14615 5' -54.7 NC_003521.1 + 148296 0.71 0.810639
Target:  5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3'
miRNA:   3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 217503 0.71 0.810639
Target:  5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3'
miRNA:   3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 120080 0.71 0.820086
Target:  5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3'
miRNA:   3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 114511 0.71 0.828499
Target:  5'- cGUGGCCgc-CGUGCCCACCGCc--- -3'
miRNA:   3'- uCAUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 134371 0.71 0.811507
Target:  5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3'
miRNA:   3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 198098 0.71 0.823472
Target:  5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3'
miRNA:   3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5'
14615 5' -54.7 NC_003521.1 + 169141 0.71 0.828499
Target:  5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 17028 0.71 0.828499
Target:  5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5'
14615 5' -54.7 NC_003521.1 + 153738 0.71 0.828499
Target:  5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3'
miRNA:   3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 46584 0.72 0.756971
Target:  5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3'
miRNA:   3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.