Results 41 - 60 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 205778 | 0.68 | 0.914012 |
Target: 5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3' miRNA: 3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 139523 | 0.68 | 0.919705 |
Target: 5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3' miRNA: 3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 224724 | 0.68 | 0.919705 |
Target: 5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3' miRNA: 3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 100954 | 0.68 | 0.919705 |
Target: 5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3' miRNA: 3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 138047 | 0.68 | 0.921917 |
Target: 5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3' miRNA: 3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 166359 | 0.68 | 0.924629 |
Target: 5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 3120 | 0.68 | 0.925164 |
Target: 5'- --cAGCCCGUgugCAUGCCUGCCccgguacCGUACu -3' miRNA: 3'- ucaUCGGGUA---GUACGGGUGGu------GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 49374 | 0.68 | 0.925164 |
Target: 5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3' miRNA: 3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 121476 | 0.68 | 0.930389 |
Target: 5'- cGU-GUCCAUgGaggccggaccccUGCCCgACCGCGUGCg -3' miRNA: 3'- uCAuCGGGUAgU------------ACGGG-UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 238042 | 0.68 | 0.930389 |
Target: 5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3' miRNA: 3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 126024 | 0.68 | 0.93538 |
Target: 5'- uGUAGUCCAugaucccgaaggUCGUGUcgccgggcuCCACCACGcUACg -3' miRNA: 3'- uCAUCGGGU------------AGUACG---------GGUGGUGC-AUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 113760 | 0.68 | 0.93538 |
Target: 5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3' miRNA: 3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 173255 | 0.68 | 0.93538 |
Target: 5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3' miRNA: 3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 130956 | 0.68 | 0.93538 |
Target: 5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3' miRNA: 3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 91521 | 0.68 | 0.93538 |
Target: 5'- cGGcGGCCgCGUCGUcgcGCuCCAgCACGUACu -3' miRNA: 3'- -UCaUCGG-GUAGUA---CG-GGUgGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 77845 | 0.68 | 0.93538 |
Target: 5'- --gGGCCaccCGUGCCCACCACu--- -3' miRNA: 3'- ucaUCGGguaGUACGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 29100 | 0.67 | 0.944663 |
Target: 5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3' miRNA: 3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 212484 | 0.67 | 0.944663 |
Target: 5'- cGUGGCCCAcacgcaCAUGgCCgacgagACCACGUAg -3' miRNA: 3'- uCAUCGGGUa-----GUACgGG------UGGUGCAUg -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 41114 | 0.67 | 0.944663 |
Target: 5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3' miRNA: 3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 136793 | 0.67 | 0.944663 |
Target: 5'- --gGGCUCAcggUCAcgcUGCCCGCCgacgaccccgGCGUGCg -3' miRNA: 3'- ucaUCGGGU---AGU---ACGGGUGG----------UGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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