Results 61 - 80 of 107 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 29100 | 0.67 | 0.944663 |
Target: 5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3' miRNA: 3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 211761 | 0.67 | 0.948959 |
Target: 5'- cGUAGCCCGagAUGUCCgGCCAgGg-- -3' miRNA: 3'- uCAUCGGGUagUACGGG-UGGUgCaug -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 214618 | 0.67 | 0.948959 |
Target: 5'- gGGUAGCCCA----GCCagACCAgCGUGCu -3' miRNA: 3'- -UCAUCGGGUaguaCGGg-UGGU-GCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 61862 | 0.67 | 0.948959 |
Target: 5'- cGgcGCCUGUcCAUGCgaCCACCACGgauaGCg -3' miRNA: 3'- uCauCGGGUA-GUACG--GGUGGUGCa---UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 132715 | 0.67 | 0.948959 |
Target: 5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3' miRNA: 3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 18310 | 0.67 | 0.953027 |
Target: 5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3' miRNA: 3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 58902 | 0.67 | 0.953027 |
Target: 5'- cGUAGCCCugggcgCGUugggaGCCCugACCugGUAUa -3' miRNA: 3'- uCAUCGGGua----GUA-----CGGG--UGGugCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 21537 | 0.67 | 0.953027 |
Target: 5'- -cUGGCCU-UCAUggGCCCGCuCAUGUGCc -3' miRNA: 3'- ucAUCGGGuAGUA--CGGGUG-GUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 226552 | 0.67 | 0.956871 |
Target: 5'- -cUGGUCaCAguucCGUGUCUACCACGUAUa -3' miRNA: 3'- ucAUCGG-GUa---GUACGGGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 174737 | 0.67 | 0.956871 |
Target: 5'- gGGcGGCCCAacgCAggGCUCgcucggcuGCCACGUACg -3' miRNA: 3'- -UCaUCGGGUa--GUa-CGGG--------UGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 55934 | 0.67 | 0.956871 |
Target: 5'- aGGUgaAGCCCAggcgCAUGagCACCGUGUGCa -3' miRNA: 3'- -UCA--UCGGGUa---GUACggGUGGUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 68717 | 0.67 | 0.956871 |
Target: 5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3' miRNA: 3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 226242 | 0.67 | 0.956871 |
Target: 5'- cGUAGCCCggCGUGUgCAgcuUCACGUcGCa -3' miRNA: 3'- uCAUCGGGuaGUACGgGU---GGUGCA-UG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 101878 | 0.67 | 0.956871 |
Target: 5'- aAGUAGCCguCGUCcugGUCCAUCuuGUACa -3' miRNA: 3'- -UCAUCGG--GUAGua-CGGGUGGugCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 192484 | 0.67 | 0.960495 |
Target: 5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3' miRNA: 3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 85333 | 0.67 | 0.960495 |
Target: 5'- -uUGGCCCG-CG-GCCCGCCGCa--- -3' miRNA: 3'- ucAUCGGGUaGUaCGGGUGGUGcaug -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 83925 | 0.67 | 0.960495 |
Target: 5'- --cGGCCCGUC--GCCC-CC-CGUGCc -3' miRNA: 3'- ucaUCGGGUAGuaCGGGuGGuGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 149263 | 0.67 | 0.960495 |
Target: 5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3' miRNA: 3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 119154 | 0.67 | 0.960495 |
Target: 5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3' miRNA: 3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5' |
|||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 129843 | 0.66 | 0.963903 |
Target: 5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3' miRNA: 3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home