miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 3120 0.68 0.925164
Target:  5'- --cAGCCCGUgugCAUGCCUGCCccgguacCGUACu -3'
miRNA:   3'- ucaUCGGGUA---GUACGGGUGGu------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 166359 0.68 0.924629
Target:  5'- --aAGCCCAggaCGUGCUCGCugaacacggugcgCACGUACu -3'
miRNA:   3'- ucaUCGGGUa--GUACGGGUG-------------GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 138047 0.68 0.921917
Target:  5'- --cGGCgCCGUCAUcgcgcagccgcugccGCuCUACCGCGUGCa -3'
miRNA:   3'- ucaUCG-GGUAGUA---------------CG-GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 100954 0.68 0.919705
Target:  5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3'
miRNA:   3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 139523 0.68 0.919705
Target:  5'- cGUAGCCgAugcUgAUGCCgAUCAUGUGCu -3'
miRNA:   3'- uCAUCGGgU---AgUACGGgUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 224724 0.68 0.919705
Target:  5'- ---cGCCCGUgGUGCUCGCCgACGcagGCg -3'
miRNA:   3'- ucauCGGGUAgUACGGGUGG-UGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 205778 0.68 0.914012
Target:  5'- uGGUGGCgCCGcacggcaugagCGUGCCCaACCGCGUcCg -3'
miRNA:   3'- -UCAUCG-GGUa----------GUACGGG-UGGUGCAuG- -5'
14615 5' -54.7 NC_003521.1 + 49872 0.69 0.910485
Target:  5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3'
miRNA:   3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 120720 0.69 0.908087
Target:  5'- uGUGGCCCuggacCGUGgCCACCAgGgGCa -3'
miRNA:   3'- uCAUCGGGua---GUACgGGUGGUgCaUG- -5'
14615 5' -54.7 NC_003521.1 + 163411 0.69 0.908087
Target:  5'- cGUGGcCCCGUCGucggcugccgcUGCCUACCAgGgUGCc -3'
miRNA:   3'- uCAUC-GGGUAGU-----------ACGGGUGGUgC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 63406 0.69 0.908087
Target:  5'- gGGUAGUCgAguuuaCGgggaagcgGCCCGCCGCGUAUa -3'
miRNA:   3'- -UCAUCGGgUa----GUa-------CGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 78320 0.69 0.901931
Target:  5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3'
miRNA:   3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 211383 0.69 0.901931
Target:  5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 203366 0.69 0.901931
Target:  5'- cGGUGGCCCGcgcgCGaGCCCACaGCGUcACc -3'
miRNA:   3'- -UCAUCGGGUa---GUaCGGGUGgUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 75917 0.69 0.895547
Target:  5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3'
miRNA:   3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 153084 0.69 0.888938
Target:  5'- --gGGCCCGggcCGggGCCCACCACGc-- -3'
miRNA:   3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 200949 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 722 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 128360 0.7 0.875058
Target:  5'- aGGUGGCCCcgCcgggcgcGCCCACCAgGgcCg -3'
miRNA:   3'- -UCAUCGGGuaGua-----CGGGUGGUgCauG- -5'
14615 5' -54.7 NC_003521.1 + 146623 0.7 0.867797
Target:  5'- --gAGCCCGUCGUcgucuucaaggGCCCcgGCCACG-ACg -3'
miRNA:   3'- ucaUCGGGUAGUA-----------CGGG--UGGUGCaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.