Results 81 - 100 of 107 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14615 | 5' | -54.7 | NC_003521.1 | + | 138805 | 0.7 | 0.860328 |
Target: 5'- cGUGGCCCAg-GUGCUCaACCACGc-- -3' miRNA: 3'- uCAUCGGGUagUACGGG-UGGUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 136694 | 0.7 | 0.860328 |
Target: 5'- --cAGCuCCAUCGUGUCC-CCACG-GCg -3' miRNA: 3'- ucaUCG-GGUAGUACGGGuGGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 123308 | 0.7 | 0.860328 |
Target: 5'- cGUAGCCCAcggaGUGCaUACCGcCGUACg -3' miRNA: 3'- uCAUCGGGUag--UACGgGUGGU-GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 226604 | 0.7 | 0.852658 |
Target: 5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3' miRNA: 3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 90822 | 0.7 | 0.852658 |
Target: 5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3' miRNA: 3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 151804 | 0.7 | 0.844792 |
Target: 5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3' miRNA: 3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 111598 | 0.7 | 0.836736 |
Target: 5'- cGUGGCCag-CGgcgccggacUGCCCACCACGcGCc -3' miRNA: 3'- uCAUCGGguaGU---------ACGGGUGGUGCaUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 34193 | 0.7 | 0.836736 |
Target: 5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3' miRNA: 3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 114511 | 0.71 | 0.828499 |
Target: 5'- cGUGGCCgc-CGUGCCCACCGCc--- -3' miRNA: 3'- uCAUCGGguaGUACGGGUGGUGcaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 153738 | 0.71 | 0.828499 |
Target: 5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3' miRNA: 3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 17028 | 0.71 | 0.828499 |
Target: 5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3' miRNA: 3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 169141 | 0.71 | 0.828499 |
Target: 5'- --cGGCCUAcggCGUGCUCACCAaGUGCg -3' miRNA: 3'- ucaUCGGGUa--GUACGGGUGGUgCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 198098 | 0.71 | 0.823472 |
Target: 5'- cGGU-GCCCuuguacgcuuuggaaAUCGUGCCgGCCACGUugucGCg -3' miRNA: 3'- -UCAuCGGG---------------UAGUACGGgUGGUGCA----UG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 120080 | 0.71 | 0.820086 |
Target: 5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3' miRNA: 3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 31221 | 0.71 | 0.820086 |
Target: 5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3' miRNA: 3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 134371 | 0.71 | 0.811507 |
Target: 5'- aAGUcGCUCAaCAUGCgCUACUGCGUGCg -3' miRNA: 3'- -UCAuCGGGUaGUACG-GGUGGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 217503 | 0.71 | 0.810639 |
Target: 5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3' miRNA: 3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 148296 | 0.71 | 0.810639 |
Target: 5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3' miRNA: 3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 43341 | 0.71 | 0.802767 |
Target: 5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3' miRNA: 3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5' |
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14615 | 5' | -54.7 | NC_003521.1 | + | 46584 | 0.72 | 0.756971 |
Target: 5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3' miRNA: 3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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